Click here to switch to the map view.

The map label for this gene is hcpA [H]

Identifier: 218703466

GI number: 218703466

Start: 241530

End: 242009

Strand: Reverse

Name: hcpA [H]

Synonym: ECUMN_0214

Alternate gene names: 218703466

Gene position: 242009-241530 (Counterclockwise)

Preceding gene: 218703467

Following gene: 218703463

Centisome position: 4.65

GC content: 50.62

Gene sequence:

>480_bases
ATGGCAAATCCCGTCTATCTGACACTAAACGGAGAACTCCAGGGACTGATTTCATCCGGATGCTCGTCAATGCCGTCCAT
CGGTAACAAGGCCCAGATTGCACATCAGGATCAGATCATGGTGATGTCACTGTCCCATGGGCTGAGTCGCGCACAGAACG
TCAATCACCAGGAACTGACTATCACGAAACCGGTGGACAAATCCTCCCCCCTTCTGGGCAAGGCCATTTCGGAGAATGAA
TGTCTGACCTGTGATTTTGTCTTCTATCGCACCAACCGTTTTGGTATTAATGAGCCGTACTACAAGCTGAAACTGACTAA
TGCCCGGATCTCAAACATCGGCCTTACCGTTCCCCATACCATTAACGACAGCCCAGGGCAGCCGGAAGAGTCTGTGTCAT
TTACCTATGAGAGCATCAACTGGGAGCACATCGTCGCCGGAACCAGTGCGTACAGTCTGTGGAGTGAACGGATTTTCTAA

Upstream 100 bases:

>100_bases
TAAGCCGCTGGCTACTGCTGAAAAATACCGGACAGGATATGGCAACGGATACCAGAACCGAACCTGTCCATCCGACTCAT
TGAGGTTAAGGAGAATAACA

Downstream 100 bases:

>100_bases
GTTACCTGGGAGTCTTTCATCTGCATTATTGTTATATTTTAAAAAGGCAATTTAACATTATAGGATAAAATGACAAAGTA
CGGTTAATCACGAATAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVMSLSHGLSRAQNVNHQELTITKPVDKSSPLLGKAISENE
CLTCDFVFYRTNRFGINEPYYKLKLTNARISNIGLTVPHTINDSPGQPEESVSFTYESINWEHIVAGTSAYSLWSERIF

Sequences:

>Translated_159_residues
MANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVMSLSHGLSRAQNVNHQELTITKPVDKSSPLLGKAISENE
CLTCDFVFYRTNRFGINEPYYKLKLTNARISNIGLTVPHTINDSPGQPEESVSFTYESINWEHIVAGTSAYSLWSERIF
>Mature_158_residues
ANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVMSLSHGLSRAQNVNHQELTITKPVDKSSPLLGKAISENEC
LTCDFVFYRTNRFGINEPYYKLKLTNARISNIGLTVPHTINDSPGQPEESVSFTYESINWEHIVAGTSAYSLWSERIF

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=149, Percent_Identity=38.255033557047, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17623; Mature: 17492

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVMSLSHGLSRAQNVNHQELT
CCCCEEEEECCCCHHHHHCCCCCCCCCCCCCEEECCCEEEEEEEHHHHHHHHCCCCCEEE
ITKPVDKSSPLLGKAISENECLTCDFVFYRTNRFGINEPYYKLKLTNARISNIGLTVPHT
EECCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEECCCCEECCCC
INDSPGQPEESVSFTYESINWEHIVAGTSAYSLWSERIF
CCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHCCC
>Mature Secondary Structure 
ANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVMSLSHGLSRAQNVNHQELT
CCCEEEEECCCCHHHHHCCCCCCCCCCCCCEEECCCEEEEEEEHHHHHHHHCCCCCEEE
ITKPVDKSSPLLGKAISENECLTCDFVFYRTNRFGINEPYYKLKLTNARISNIGLTVPHT
EECCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEECCCCEECCCC
INDSPGQPEESVSFTYESINWEHIVAGTSAYSLWSERIF
CCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]