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The map label for this gene is yidZ

Identifier: 218702561

GI number: 218702561

Start: 4493103

End: 4494062

Strand: Direct

Name: yidZ

Synonym: ECIAI39_4315

Alternate gene names: 218702561

Gene position: 4493103-4494062 (Clockwise)

Preceding gene: 218702560

Following gene: 218702562

Centisome position: 87.55

GC content: 51.15

Gene sequence:

>960_bases
ATGAAGAAATCCATCACCACGCTTGATCTCAATCTGCTGCTCTGTCTGCAACTGCTGATGCAGGAGCGTAGCGTGACCAA
AGCGGCGAAGCGAATGAACGTGACCCCTTCGGCGGTGAGTAAGTCGCTGGCAAAGTTAAGAGCGTGGTTTGACGACCCGC
TCTTTGTAAACTCACCGCTGGGGCTGTCGCCCACACCGCTAATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAA
ATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCAGCAGAATCACCGCT
AATGATGATCATGCTTAATGCGCTGTCGAAACGGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGG
ATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATTGGTTTTTCCGGTCGCGAAAGTCATCCCCGTTCGCGG
GAGCTGTTAAGCTCGCTACCGTTAGCCATTGATTATGAAGTGCTGTTTAGTGATGTGCCCTGCGTCTGGTTACGCAAAGA
TCATCCGGCACTGCATGAAGCGTGGAATCTGGACACCTTTTTACGTTATCCGCATATCAGCATTTGCTGGGAACAGAGCG
ATACCTGGGCGCTGGACAATGTGTTACAGGAGTTGGGGCGCGAACGTACTATTGCAATGAGCCTGCCGGAATTCGAGCAG
TCACTGTTTATGGCAGCGCAACCCGACAATCTACTACTGGCGACCGCGCCGCGCTACTGTCAGTACTACAATCAACTCCA
TCAACTGCCGTTAGTTGCTCTTCCTCTCCCATTTGATGAAATCCAGCAAAAAAAGCTGGAAGTCCCTTTTACCCTTCTGT
GGCATAAACGGAACAGCCGTAATCCGAAGATCGTCTGGTTACGGGAAACCATTAAAAATCTTTACGCGTCGATGGCATAA

Upstream 100 bases:

>100_bases
ATCGGCGCATGGAATATGCTGATCGGGATTCTGATTGCCTGTAGCATAGTGAGCCTGTTGCTGATTATGTTCATCGCGCC
TGGACGCCCGGTTGCCGCTC

Downstream 100 bases:

>100_bases
CCGAATCGTATGAAACGCGACCCAATTTCACAATGAAATGTAAAAAAGTTGTAATAAACTTATCTGAATCGAACTTTTAG
TCGCTTTAGTCTGTCCATCA

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDEIQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA

Sequences:

>Translated_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDEIQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA
>Mature_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDEIQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=319, Percent_Identity=98.1191222570533, Blast_Score=643, Evalue=0.0,
Organism=Escherichia coli, GI87081766, Length=315, Percent_Identity=23.4920634920635, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786820, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081684, Length=329, Percent_Identity=24.6200607902736, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36944; Mature: 36944

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDEIQQKKLEVPFTLLWHKRNSR
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDEIQQKKLEVPFTLLWHKRNSR
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA