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The map label for this gene is yhjC

Identifier: 218702286

GI number: 218702286

Start: 4183670

End: 4184641

Strand: Direct

Name: yhjC

Synonym: ECIAI39_4024

Alternate gene names: 218702286

Gene position: 4183670-4184641 (Clockwise)

Preceding gene: 218702284

Following gene: 218702287

Centisome position: 81.52

GC content: 52.47

Gene sequence:

>972_bases
ATGTTAGAAAAAACAATAAACAATGCGATATGCGCGCTACTGTTTCGCTGTGAACAACAATTGGTCAAAGAAATGGATAA
AATTCACGCAATGCAGTTGTTCATCAAAGTCGCTGAGCTGGAAAGTTTTTCCCGCGCAGCGGATTTCTTTGCTTTGCCAA
AGGGAAGTGTTTCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGGCGGGTC
AAACTCACGCCAGAAGGCATGACCTATTATCAACGGGCAAAAGATGTGTTGAGTAATCTCAACGAACTGGACGGTCTGTT
TCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGC
GTCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAGCTGAGTAGCCATGACCGTCCGGTAGATATTCTTCAC
GATGGTTTTGATTGCGTGATACGCACTGGCGCGTCACCGGAAGATGGCGTTATCGCCCGTCCCCTCGGCAAACTGACCGT
GGTCAATTGTGCCAGTCCACACTATCTGACGCGCTTTGGTTATCCGCAAAGCCCCGACGATCTGGCTTCACACGCAATAG
TGCGTTACACACCGCACCTGGGTGTACATCCGTTAGGTTTTGAGGTTGCCAGCGTTAATGGCGTCCAGTGGTTTAAGTCT
GGCGGCATGTTGACGGTAAACAGTAGCGAAAACTATCTCGCCGCCGGTCTTGCCGGTCTGGGGATTATTCAGATCCCGCG
CATTGCCGTGCGCGAAGCCCTGCGTGCCGGGCGGCTTATTGAAGTATTACCTGGCTACCGTGCCGAGCCGCTGTCCCTTT
CACTGGTTTATCCGCAGCGTCGGGAGCTTTCCCGGCGTGTAAACCTGTTTATGCAGTGGCTGGCTGGCGTAATGAAAGAG
TACCTGGACTGA

Upstream 100 bases:

>100_bases
CTGTTTAGGGAAATTCACCTTTCTCATAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGTCATGACAAC
ATTGTGAAACCCGGTATTAG

Downstream 100 bases:

>100_bases
CCGACTATACTTTTTAAGAATGACCACGACAGAAGGACAAAAGAGCGGATGACGCAGGAAAACGAGATCAAACGTCCCAC
CCAGGATCTGGAGCACGAGC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLEKTINNAICALLFRCEQQLVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGASPEDGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLASHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
YLD

Sequences:

>Translated_323_residues
MLEKTINNAICALLFRCEQQLVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGASPEDGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLASHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
YLD
>Mature_323_residues
MLEKTINNAICALLFRCEQQLVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGASPEDGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLASHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
YLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=98.3277591973244, Blast_Score=603, Evalue=1e-174,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=30.1003344481605, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=29.0102389078498, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=29.1095890410959, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=29.2253521126761, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.0969899665552, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789173, Length=303, Percent_Identity=27.3927392739274, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=27.7591973244147, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786448, Length=285, Percent_Identity=25.9649122807018, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=31.6091954022989, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1790399, Length=160, Percent_Identity=30.625, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.8956228956229, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=32.1167883211679, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36029; Mature: 36029

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKTINNAICALLFRCEQQLVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGASPEDGVIAR
ECCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCEEEC
PLGKLTVVNCASPHYLTRFGYPQSPDDLASHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCHHHHHHCCEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEYLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEKTINNAICALLFRCEQQLVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGASPEDGVIAR
ECCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCEEEC
PLGKLTVVNCASPHYLTRFGYPQSPDDLASHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCHHHHHHCCEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEYLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]