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The map label for this gene is agaB

Identifier: 218701913

GI number: 218701913

Start: 3799319

End: 3799795

Strand: Direct

Name: agaB

Synonym: ECIAI39_3639

Alternate gene names: 218701913

Gene position: 3799319-3799795 (Clockwise)

Preceding gene: 218701912

Following gene: 218701914

Centisome position: 74.03

GC content: 44.23

Gene sequence:

>477_bases
ATGAGCAGTCCAAATATTCTCTTAACCCGTATTGATAACCGTCTGGTTCACGGTCAGGTTGGCGTGACCTGGACATCCAC
CATCGGTGCGAATCTGTTGGTAGTCGTGGATGATGTTGTCGCTAACGATGATATTCAACAGAAATTAATGGGTATTACCG
CAGAAACCTACGGCTTTGGCATTCGTTTCTTTACTATCGAAAAAACCATTAACGTCATCGGCAAAGCTGCACCGCATCAG
AAGATCTTCCTGATTTGCCGTACGCCACAAACGGTACGTAAATTGGTAGAAGGTGGTATTGACCTGAAAGATGTCAACGT
CGGCAATATGCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGATGACCAGGATCTCGCGGACTTAC
GTTTTATTAAACAACGTGGCGTGAATGTTTTCATTCAGGACGTCCCTGGCGATCAAAAAGAACAAATCCCTGACTAA

Upstream 100 bases:

>100_bases
AAGGAGATGACTAAACCTTAATAAATACATCAGTACAATATCGCAACAATAATATATTTAAAAAAATTATATTATTCAAC
TTTATGGTGAGGATTACACA

Downstream 100 bases:

>100_bases
ATCTAAAATCGCCTTAATATTGGTTTGAGGTAATAAAAATGCATGAAATAACCCTACTCCAGGGATTATCCCTGGCGGCG
TTAGTTTTCTTTCTGGGGAT

Product: PTS system N-acetylgalactosamine-specific transporter subunit IIB

Products: NA

Alternate protein names: EIIB-Aga; PTS system N-acetylgalactosamine-specific EIIB component 1 [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQ
KIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLRFIKQRGVNVFIQDVPGDQKEQIPD

Sequences:

>Translated_158_residues
MSSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQ
KIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLRFIKQRGVNVFIQDVPGDQKEQIPD
>Mature_157_residues
SSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQK
IFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLRFIKQRGVNVFIQDVPGDQKEQIPD

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This

COG id: COG3444

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789527, Length=158, Percent_Identity=98.7341772151899, Blast_Score=317, Evalue=2e-88,
Organism=Escherichia coli, GI87082217, Length=146, Percent_Identity=48.6301369863014, Blast_Score=146, Evalue=7e-37,
Organism=Escherichia coli, GI1788120, Length=152, Percent_Identity=33.5526315789474, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004720
- InterPro:   IPR018455 [H]

Pfam domain/function: PF03830 PTSIIB_sorb [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 17578; Mature: 17447

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS51101 PTS_EIIB_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFG
CCCCCEEEEEECCEEEECCCCEEEECCCCCEEEEEEECHHCCCHHHHHHHCCCCHHCCCE
IRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQIS
EEEEEEHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHCCCCEEECCCCCEEHHHHHHHHC
SKVYVDDQDLADLRFIKQRGVNVFIQDVPGDQKEQIPD
CEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHCCCCC
>Mature Secondary Structure 
SSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFG
CCCCEEEEEECCEEEECCCCEEEECCCCCEEEEEEECHHCCCHHHHHHHCCCCHHCCCE
IRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQIS
EEEEEEHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHCCCCEEECCCCCEEHHHHHHHHC
SKVYVDDQDLADLRFIKQRGVNVFIQDVPGDQKEQIPD
CEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]