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The map label for this gene is ompL

Identifier: 218701425

GI number: 218701425

Start: 3254677

End: 3255369

Strand: Direct

Name: ompL

Synonym: ECIAI39_3125

Alternate gene names: 218701425

Gene position: 3254677-3255369 (Clockwise)

Preceding gene: 218701424

Following gene: 218701429

Centisome position: 63.42

GC content: 40.84

Gene sequence:

>693_bases
ATGAAAAAGATTAATGCAATAATTCTATTATCCTCTCTGACCTCTGCCTCGGTATTTGCTGGCGCATACGTCGAAAACAG
GGAGGCATATAATCTCGCCTCCGATCAGGGCGAGGTTATGCTACGTGTGGGTTATAACTTCGATATGGGCGCGGGTATTA
TGTTAACCAATACCTACACCTTTCAGCGAGAAGATGAACTCAAACATGGATATAACGAAATCGAAGGTTGGTATCCGTTA
TTCAAACCAACCGATAAATTAACCATCCAGCCCGGTGGCTTAATTAATGATAAGAGTATCGGTTCGGGTGGTGCTGTTTA
TCTGGATGTTAACTACAAATTTACTCCATGGTTTAACCTGACGGTACGTAATCGTTTTAACCATAATAACTACAGCTCAA
CCGATTTGAACGGTGATCTGGATAATAATGACAGCTACGAGATTGGCAACTACTGGAACTTTATTATTACCGATAAGTTC
TCATATACCTTTGAACCGCATTATTTTTATAACATTAATGATTTCAATAGCAGCAATGGTACGAAGCATCACTGGGAAAT
CACTAACACCTTCCGTTATCGCATTAATGAACACTGGCTCCCTTATTTCGAATTACGCTGGTTAGATCGTAATGTCGAAC
CGTACCACCGCGAGCAAAACCAGATTCGTATCGGGACGAAGTATTTCTTCTGA

Upstream 100 bases:

>100_bases
GACAGAAGAAAAAACGGCTTCCGTAACGTTATAAATGTCAATAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCCCTA
CGTTTAAAAATGGACTTATT

Downstream 100 bases:

>100_bases
TGTAAAACTGCCGGATGAGGCGAAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCCACAT
CCGGCCATTAATTAAGCTTC

Product: outer membrane porin L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF

Sequences:

>Translated_230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
>Mature_230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF

Specific function: Outer membrane channel protein that allows an efficient diffusion of low-molecular-weight solutes such as small sugars and tetraglycine. However, the specific substrate recognized by the ompL channel is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. OmpL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790307, Length=230, Percent_Identity=94.3478260869565, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI87082420, Length=235, Percent_Identity=24.6808510638298, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 27160; Mature: 27160

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNINDFNSSNG
EEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNINDFNSSNG
EEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]