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The map label for this gene is ycdZ

Identifier: 218700461

GI number: 218700461

Start: 2166717

End: 2167208

Strand: Reverse

Name: ycdZ

Synonym: ECIAI39_2127

Alternate gene names: 218700461

Gene position: 2167208-2166717 (Counterclockwise)

Preceding gene: 218700462

Following gene: 218700456

Centisome position: 42.23

GC content: 53.86

Gene sequence:

>492_bases
ATGAACATACTTCTCTCTATTGCAATCACAACAGGTATTCTCTCCGGTATCTGGGGATGGGTGGCTGTTTCCCTGGGCTT
ACTAAGCTGGGCGGGCTTCCTGGGCTGTACGGCCTACTTTGCCTGCCCGCAAGGTGGGCTGAAAGGGCTGGCGATCTCCG
CTGCAACCCTGCTTAGTGGCGTGGTGTGGGCGATGGTCATTATTTACGGTAGTGCACTGGCACCACATCTGGAAATTCTC
GGTTATGTCATAACCGGTATTGTCGCGTTTCTGATGTGTATTCAGGCGAAACAGCTGCTGCTTTCATTTGTTCCGGGGAC
GTTTATAGGCGCATGCGCGACGTTTGCCGGGCAGGGTGACTGGAAACTGGTGTTACCTTCGCTGGCGCTCGGGTTGATAT
TTGGTTACGCAATGAAAAACAGCGGCCTGTGGCTGGCGGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAA
AATAAAGCGTGA

Upstream 100 bases:

>100_bases
TGTGATCTGCATCACTCATAACTGCAACAGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGT
TTTCTGCTATCATGCGCGGC

Downstream 100 bases:

>100_bases
GGGGCACTCACGCTTTCGCTTAAACCGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAA
CCGACATATGGCGGTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA

Sequences:

>Translated_163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA
>Mature_163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC

Homologues:

Organism=Escherichia coli, GI87081825, Length=163, Percent_Identity=100, Blast_Score=318, Evalue=8e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDZ_ECOLI (P75916)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64846
- RefSeq:   AP_001661.1
- RefSeq:   NP_415554.4
- ProteinModelPortal:   P75916
- STRING:   P75916
- EnsemblBacteria:   EBESCT00000002360
- EnsemblBacteria:   EBESCT00000017211
- GeneID:   945617
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5147
- KEGG:   eco:b1036
- EchoBASE:   EB3631
- EcoGene:   EG13872
- eggNOG:   NOG05567
- GeneTree:   EBGT00050000009766
- HOGENOM:   HBG467277
- OMA:   GSCATFA
- ProtClustDB:   CLSK869642
- BioCyc:   EcoCyc:G6542-MONOMER
- Genevestigator:   P75916
- InterPro:   IPR009476

Pfam domain/function: PF06496 DUF1097

EC number: NA

Molecular weight: Translated: 17075; Mature: 17075

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x22f69254)-; HASH(0x230fa114)-; HASH(0x229332cc)-; HASH(0x1debac18)-; HASH(0x2301f420)-; HASH(0x230feb1c)-;

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
WKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCH
>Mature Secondary Structure
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
WKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503