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The map label for this gene is ymdC

Identifier: 218700451

GI number: 218700451

Start: 2159728

End: 2161149

Strand: Reverse

Name: ymdC

Synonym: ECIAI39_2117

Alternate gene names: 218700451

Gene position: 2161149-2159728 (Counterclockwise)

Preceding gene: 218700452

Following gene: 218700449

Centisome position: 42.11

GC content: 50.28

Gene sequence:

>1422_bases
TTGCCCCGGCTGGCGAGCGCGGTGCTGCCACTGTGTTCGCAACATCCCGGTCAGTGTGGCCTTTTTCCTCTGGAGAAAAG
TCTGGATGCGTTTGCTGCCCGGTATCGTCTGGCCGAAATAGCAGAGCATACGCTGGATGTTCAGTATTACATCTGGCAGG
ACGATATGTCGGGTCGATTACTGTTTTCCGCCCTGTTAGCCGCAGCAAAGCGTGGCGTTCGCGTCCGTTTGTTGCTGGAC
GACAACAATACACCCGGACTTGACGACATTTTACGCTTGCTTGACAGTCATCCCCGCATTGAAGTCCGGCTTTTTAATCC
TTTCTCGTTTCGCTTGCTACGTCCGCTTGGTTATATCACCGACTTTTCCCGTCTCAATCGCCGTATGCACAATAAAAGTT
TCACTGTCGATGGCGTGGTGACGCTGGTGGGAGGTCGAAATATTGGTGATGCCTATTTTGGGGCAGGGGAAGAGCCACTT
TTTTCGGATTTAGATGTCATGGCAATAGGACCCGTGGTAGAGGACGTTGCCGATGATTTCGCCCGCTACTGGTATTGCAA
ATCGGTTTCACCCTTACAGCAGGTGCTGGATGTCCCGGAAGGTGAAATGGCGGATCGCATCGAGTTACCCGCCTCCTGGC
ATAACGATGCTATGACGCATCGTTACTTACGCAAAATGGAATCCAGTCCGTTTATAAATCATCTGGTTGATGGAACGTTG
CCGCTTATCTGGGCGAAAACACGTTTATTAAGTGATGATCCGGCGAAAGGGGAGGGCAAGGCAAAACGGCATTCACTGTT
ACCGCAGCGCCTGTTCGATATCATGGGCTCACCCAGTGAACGCATCGATATTATCTCTTCCTATTTTGTACCGACACGCG
CAGGTGTGGCGCAACTCTTACGGATGGTGAGAAAAGGGGTAAAGATTGCGATCCTAACCAATTCTCTTGCCGCTAACGAT
GTTGCTGTCGTCCATGCCGGATACGCGCGCTGGCGCAAAAAATTGCTCCGCTATGGCGTGGAATTATATGAACTCAAGCC
GAAGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCCGGTGCCAGCCTGCATGCTAAAACCTTTA
GCATCGATGGTAAAACGGTGTTTATCGGCTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTC
GTGATAGAGAGCGAAACGCTGGCACAGTTAATTGATAAACGCTTTATTCAGAGCCAGTATGATGCGGCCTGGCAGCTCCG
TCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCA
GTTTCTGGAAGCGGGTTATGGTCAGACTGGTGTCGATATTGCCCGTGGAATGGTTATTATAA

Upstream 100 bases:

>100_bases
ACCCGTCACGCTTTACCCGAACAGGTATACTTTGTCTGTTATGATGAAGAAAACGCCCACCTCTACGAAAGACTCCTTAC
CCAACAAGGAGATGAATGAT

Downstream 100 bases:

>100_bases
GCGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTGACAACCGGTTTACCAGAGAACAAAAACTTCAGTAACGGG
ATGCGTAAATGAATTTCATA

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEIAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPKREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLVSILPVEWLL

Sequences:

>Translated_473_residues
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEIAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPKREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLVSILPVEWLL
>Mature_472_residues
PRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEIAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDD
NNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLF
SDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLP
LIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDV
AVVHAGYARWRKKLLRYGVELYELKPKREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFV
IESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLVSILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=99.3657505285412, Blast_Score=964, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=399, Percent_Identity=23.0576441102757, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53704; Mature: 53572

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEIAEHTLDVQYYIWQDDMSGRL
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCH
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPKREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHCHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLVSILPVEWLL
CCCEEEEECCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure 
PRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEIAEHTLDVQYYIWQDDMSGRL
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCH
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPKREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHCHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLVSILPVEWLL
CCCEEEEECCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]