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The map label for this gene is yddK [H]

Identifier: 218700100

GI number: 218700100

Start: 1819362

End: 1820618

Strand: Reverse

Name: yddK [H]

Synonym: ECIAI39_1732

Alternate gene names: 218700100

Gene position: 1820618-1819362 (Counterclockwise)

Preceding gene: 218700101

Following gene: 218700099

Centisome position: 35.48

GC content: 33.97

Gene sequence:

>1257_bases
ATGAAATTCCCTTCAATATTTAATAAAATAAATCCACAATCCATACAGCAACATCCAGAAAAAAATGAACTTAACTGGAT
GCTCGAATTAAATCAATGGAAAGCAGAACGCATACTTACAGGTGAAATCCATCGTCCGGAATGCCGAAACGAAGCCGCTA
AAAGGATAAATTGTGCTTTTTTGTCGAAACAGAATGATATTGATTTATCAGGACTTAATTTAACTACCCAACCACCAGGG
CTGCAAAACTTCACCTCTATCAATCTTGATAATAACCAACTCACACATTTTGATACAACCACCTACGATAGACTCGTAAA
GCTTAGTCTGAATAGTAATGCTCTTGAGTCAATAAATTTTCCTCAAGGTAGAAATGTAAGCATTACACATATATCTATGA
ATAATAATTCTCTCAGAAATATTGATATAGATCGGCTTTCATCAATTACTTATTTTAGTGCGGCACATAATCAACTAGAG
TTTGTGCAATTAGAATGTTGCGAAAGGCTGCAGTACCTGAATCTCAGCCACAATCAATTAACTGATATTGTGGCAGGAAA
TAAAGATGAACTTTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACATAATGCCTTATTCCCCAACTTGAATA
CGTTACTTATCAACAACAACTTGCTTTCTGAAATTAAAATATTCTTTAGCAACTTCTGCAATGTTCAGACATTAAACGCT
GCGAACAATCAGTTGGAAAAAATAAACCTTCATTTCCTGACTTATCTTTCATCTATCAAAAGTTTAAGGCTGGACAATAA
TAAAATAACCCGCATTGACACTAAGAACACATCCGATATTGGAACTTTATTCCCCATAATAAAACAGAGCAAAAACTTAA
ATTTTTTAAATGTTTCTGGGCAGAACAATTGCCCTACTATGCAGCTCATGTTATTTAATTTATTTTCCCCAGCACTTAAG
CTTAATACTGGCCTGGCAATTCTTTCGCCTGGTGCATTTGAAGTTCACTCTGACGGAGTAGATGTGGATAACGAATTGTT
TCACTATACTATTAAAGAAGCATATACCCCATATAATATACACACTTATAAAACAGAAGAAGTTGTAAATCAGATGAATA
TAAAAATTAAAAATATGACATTAGATGAAATAAACAATACTTACTGTAATAACGATTATTACAATGAGGCGATAAGAGAG
GAACCGATAGACTTTCTGGACAGATCGTTTTCCTCCAGCTCATGGCCTTTTCAGTGA

Upstream 100 bases:

>100_bases
ATAATTGGTTAAGCCAATCCTTTACAACAGAGTTATAAAACACATCCTGATTTATCAAGGGTAATAAATCATTAAAATAA
AGCATTACTACGGAGCAGTT

Downstream 100 bases:

>100_bases
ATAAATCATCACTAATTCTATAAGTGTCTGGTCTTGTTGAGAATATAGTTAATATGCAACCCTTTAGATTCACGATCTGA
AGGGTTGAAACATGACATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKFPSIFNKINPQSIQQHPEKNELNWMLELNQWKAERILTGEIHRPECRNEAAKRINCAFLSKQNDIDLSGLNLTTQPPG
LQNFTSINLDNNQLTHFDTTTYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNSLRNIDIDRLSSITYFSAAHNQLE
FVQLECCERLQYLNLSHNQLTDIVAGNKDELLLLDLSHNKLTSLHNALFPNLNTLLINNNLLSEIKIFFSNFCNVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTKNTSDIGTLFPIIKQSKNLNFLNVSGQNNCPTMQLMLFNLFSPALK
LNTGLAILSPGAFEVHSDGVDVDNELFHYTIKEAYTPYNIHTYKTEEVVNQMNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFQ

Sequences:

>Translated_418_residues
MKFPSIFNKINPQSIQQHPEKNELNWMLELNQWKAERILTGEIHRPECRNEAAKRINCAFLSKQNDIDLSGLNLTTQPPG
LQNFTSINLDNNQLTHFDTTTYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNSLRNIDIDRLSSITYFSAAHNQLE
FVQLECCERLQYLNLSHNQLTDIVAGNKDELLLLDLSHNKLTSLHNALFPNLNTLLINNNLLSEIKIFFSNFCNVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTKNTSDIGTLFPIIKQSKNLNFLNVSGQNNCPTMQLMLFNLFSPALK
LNTGLAILSPGAFEVHSDGVDVDNELFHYTIKEAYTPYNIHTYKTEEVVNQMNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFQ
>Mature_418_residues
MKFPSIFNKINPQSIQQHPEKNELNWMLELNQWKAERILTGEIHRPECRNEAAKRINCAFLSKQNDIDLSGLNLTTQPPG
LQNFTSINLDNNQLTHFDTTTYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNSLRNIDIDRLSSITYFSAAHNQLE
FVQLECCERLQYLNLSHNQLTDIVAGNKDELLLLDLSHNKLTSLHNALFPNLNTLLINNNLLSEIKIFFSNFCNVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTKNTSDIGTLFPIIKQSKNLNFLNVSGQNNCPTMQLMLFNLFSPALK
LNTGLAILSPGAFEVHSDGVDVDNELFHYTIKEAYTPYNIHTYKTEEVVNQMNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFQ

Specific function: Unknown

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 9 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Escherichia coli, GI1787744, Length=111, Percent_Identity=94.5945945945946, Blast_Score=226, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI71984630, Length=210, Percent_Identity=31.4285714285714, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 48000; Mature: 48000

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFPSIFNKINPQSIQQHPEKNELNWMLELNQWKAERILTGEIHRPECRNEAAKRINCAF
CCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHEEEEE
LSKQNDIDLSGLNLTTQPPGLQNFTSINLDNNQLTHFDTTTYDRLVKLSLNSNALESINF
ECCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEECCCCHHHCCC
PQGRNVSITHISMNNNSLRNIDIDRLSSITYFSAAHNQLEFVQLECCERLQYLNLSHNQL
CCCCCEEEEEEEECCCCCEECCHHHHCCEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHH
TDIVAGNKDELLLLDLSHNKLTSLHNALFPNLNTLLINNNLLSEIKIFFSNFCNVQTLNA
HHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECC
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTKNTSDIGTLFPIIKQSKNLNFLNVSG
CCCCHHEEHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECC
QNNCPTMQLMLFNLFSPALKLNTGLAILSPGAFEVHSDGVDVDNELFHYTIKEAYTPYNI
CCCCCHHHHHHHHHHCCHHEECCCEEEECCCCEEEECCCCCCCCHHHEEEHHHCCCCCEE
HTYKTEEVVNQMNIKIKNMTLDEINNTYCNNDYYNEAIREEPIDFLDRSFSSSSWPFQ
EEEEHHHHHHHHCEEEEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKFPSIFNKINPQSIQQHPEKNELNWMLELNQWKAERILTGEIHRPECRNEAAKRINCAF
CCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHEEEEE
LSKQNDIDLSGLNLTTQPPGLQNFTSINLDNNQLTHFDTTTYDRLVKLSLNSNALESINF
ECCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEECCCCHHHCCC
PQGRNVSITHISMNNNSLRNIDIDRLSSITYFSAAHNQLEFVQLECCERLQYLNLSHNQL
CCCCCEEEEEEEECCCCCEECCHHHHCCEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHH
TDIVAGNKDELLLLDLSHNKLTSLHNALFPNLNTLLINNNLLSEIKIFFSNFCNVQTLNA
HHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECC
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTKNTSDIGTLFPIIKQSKNLNFLNVSG
CCCCHHEEHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECC
QNNCPTMQLMLFNLFSPALKLNTGLAILSPGAFEVHSDGVDVDNELFHYTIKEAYTPYNI
CCCCCHHHHHHHHHHCCHHEECCCEEEECCCCEEEECCCCCCCCHHHEEEHHHCCCCCEE
HTYKTEEVVNQMNIKIKNMTLDEINNTYCNNDYYNEAIREEPIDFLDRSFSSSSWPFQ
EEEEHHHHHHHHCEEEEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]