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The map label for this gene is C

Identifier: 218699885

GI number: 218699885

Start: 1580862

End: 1582328

Strand: Direct

Name: C

Synonym: ECIAI39_1512

Alternate gene names: 218699885

Gene position: 1580862-1582328 (Clockwise)

Preceding gene: 218699884

Following gene: 218699886

Centisome position: 30.8

GC content: 59.85

Gene sequence:

>1467_bases
GTGACGACTATCAGGAAATTTTTGCCCAGCAGGTCCGTGAAACGATGGAGCGCCGCGCAGCCGGTCTTAAACCGCCCGCC
TGGGCGGCAGCGACATTTGAATCCGGACTGCGACAATCAACAGAGGAGGAGAAGAGTGACAGCAGAGCTGCGTAATCTCC
CGCATATTGCCAGCATGGCCTTTAATGAGCCGCTGATGCTTGAACCCGCCTATGCGCGGGTTTTCTTTTGTGCGCTTGCA
GGCCAGCTTGGGATCAGCCGCCTGACGGATGCGGTGTCCGCCGACAGCCTGACTGCCCAGGAGGCACTCGCGACGCTGGC
ATTATCCGGTGATGATGACGGACCACGACAGGCCTGCAGTTATCAGGTCATGAACGGCATCGCCGTGCTGCCGGTGTCCG
GCACGCTGGTCAGCCGGACGCGGGCGCTGCAGCCGTACTCGGGGATGACCGGTTACAACGGCATTATCGCCCGTCTGCAA
CAGGCTGCCAGCGACCCGATGGTGGACGGCATTCTGCTCGATATGGACACGCCAGGCGGAATGGTGGCGGGGGCATTTGA
CTGCGCTGACATCATCGCCCGTGTGCGTGACATAAAACCGGTATGGGCGCTGGCCAACGACATGAACTGCAGTGCAGGTC
AGCTGCTTGCCAGTGCCGCCTCCCGGCGCCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCAC
AGTAATTACGGTGCTGCCCTGGAGAAACAGGGTGTGGAAATCACGCTGATTTACAGCGGCAGCCATAAGGTGGATGGCAA
TCCCTACAGCCATCTTCCGGATGACGTCCGGGAGACACTGCAGTCCCGGATGGACGCAACCCGCCAGATGTTTGCGCAGA
AGGTGTCGGCATATACCGGCCTGTCTGTGCAGGCTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATT
GATGCCGGACTGGCTGATGAACTTGTTAACAGCACCGATGCGATCACCGTCATGCGTGATGCACTGGATGCGCGTAAATC
CCGTCTCTCAGGAGGGCGAATGACCAAAGAGACTCAATCAACAACTGTTTCAGCCACTGCTTCGCAGGCTGACGTTACTG
ACGTGGTGCCAGCGACGGAGGGCGAAAACGCCAGCGCGGCGCAGCCGGACGTGAACGCGCAGATCACCGCAGCGGTTGCG
GCAGAAAACAGCCGCATTATGGGGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCGCGCGTTCTGGCAGA
AACCCCCGGAATGACCGTGGAAACGGCCCGCCGCATTCTGGCTGCAGCACCACAGAGTGCACAGGCGCGCAGTGACACTG
CGCTGGATCGTCTGATGCAGGGTGCACCGGCACCGCTGGCTGCAGGTAACCTGGCATCTGATACCAATAAAGAATTACTT
AATACACCTGAAGCTTTACCGGTATAA

Upstream 100 bases:

>100_bases
TCCGGTCGTATGGCCATCGATGGTCTGAAAGAAGTTCAGGAAGCGGTGATGCTGATAGAAGCCGGACTGAGCACCTACGA
GAAAGAGTGCGCGAAACGCG

Downstream 100 bases:

>100_bases
GAGGCAGTTATGGCGACAAAAGAAGAGTTTAACCATTACCAGCCGCTGGGTAACAGTGATCCGGCTCATACAGCAATTGC
GCCTGGCGGATTGAGTGCGA

Product: minor capsid protein C from bacteriophage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTTIRKFLPSRSVKRWSAAQPVLNRPPGRQRHLNPDCDNQQRRRRVTAELRNLPHIASMAFNEPLMLEPAYARVFFCALA
GQLGISRLTDAVSADSLTAQEALATLALSGDDDGPRQACSYQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQ
QAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAH
SNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVLDTEAAVYSGQEAI
DAGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEGENASAAQPDVNAQITAAVA
AENSRIMGILNCEEAHGREEQARVLAETPGMTVETARRILAAAPQSAQARSDTALDRLMQGAPAPLAAGNLASDTNKELL
NTPEALPV

Sequences:

>Translated_488_residues
MTTIRKFLPSRSVKRWSAAQPVLNRPPGRQRHLNPDCDNQQRRRRVTAELRNLPHIASMAFNEPLMLEPAYARVFFCALA
GQLGISRLTDAVSADSLTAQEALATLALSGDDDGPRQACSYQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQ
QAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAH
SNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVLDTEAAVYSGQEAI
DAGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEGENASAAQPDVNAQITAAVA
AENSRIMGILNCEEAHGREEQARVLAETPGMTVETARRILAAAPQSAQARSDTALDRLMQGAPAPLAAGNLASDTNKELL
NTPEALPV
>Mature_487_residues
TTIRKFLPSRSVKRWSAAQPVLNRPPGRQRHLNPDCDNQQRRRRVTAELRNLPHIASMAFNEPLMLEPAYARVFFCALAG
QLGISRLTDAVSADSLTAQEALATLALSGDDDGPRQACSYQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQ
AASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHS
NYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVLDTEAAVYSGQEAID
AGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEGENASAAQPDVNAQITAAVAA
ENSRIMGILNCEEAHGREEQARVLAETPGMTVETARRILAAAPQSAQARSDTALDRLMQGAPAPLAAGNLASDTNKELLN
TPEALPV

Specific function: Digestion of cleaved signal peptides. Required for efficient processing of precursors under conditions of hyper-secretion [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=178, Percent_Identity=28.0898876404494, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 51818; Mature: 51687

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIRKFLPSRSVKRWSAAQPVLNRPPGRQRHLNPDCDNQQRRRRVTAELRNLPHIASMA
CCCHHHHCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
FNEPLMLEPAYARVFFCALAGQLGISRLTDAVSADSLTAQEALATLALSGDDDGPRQACS
CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
YQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGG
HHHHCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
MVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAH
CEECHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
SNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTG
CCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVQAVLDTEAAVYSGQEAIDAGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQS
CEEEEEECCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCC
TTVSATASQADVTDVVPATEGENASAAQPDVNAQITAAVAAENSRIMGILNCEEAHGREE
CEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHCCCHH
QARVLAETPGMTVETARRILAAAPQSAQARSDTALDRLMQGAPAPLAAGNLASDTNKELL
HHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
NTPEALPV
CCCCCCCC
>Mature Secondary Structure 
TTIRKFLPSRSVKRWSAAQPVLNRPPGRQRHLNPDCDNQQRRRRVTAELRNLPHIASMA
CCHHHHCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
FNEPLMLEPAYARVFFCALAGQLGISRLTDAVSADSLTAQEALATLALSGDDDGPRQACS
CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
YQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGG
HHHHCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
MVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAH
CEECHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
SNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTG
CCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVQAVLDTEAAVYSGQEAIDAGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQS
CEEEEEECCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCC
TTVSATASQADVTDVVPATEGENASAAQPDVNAQITAAVAAENSRIMGILNCEEAHGREE
CEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHCCCHH
QARVLAETPGMTVETARRILAAAPQSAQARSDTALDRLMQGAPAPLAAGNLASDTNKELL
HHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
NTPEALPV
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 10455123 [H]