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The map label for this gene is ydhY

Identifier: 218699761

GI number: 218699761

Start: 1452770

End: 1453396

Strand: Direct

Name: ydhY

Synonym: ECIAI39_1384

Alternate gene names: 218699761

Gene position: 1452770-1453396 (Clockwise)

Preceding gene: 218699760

Following gene: 218699762

Centisome position: 28.31

GC content: 48.01

Gene sequence:

>627_bases
ATGAACCCGGTTGATCGTCCACTATTAGATATTGGCTTAACGCGATTAGAATTCTTGCGTATATCAGGAAAAGGCCTTGC
TGGTTTAACAATTGCCCCTGCGTTACTGTCACTTTTGGGTTGCAAACAGGAAGATATTGATAGCGGCACAGTAGGGTTGA
TAAATACACCCAAAGGAGTGCTGGTGACCCAACGTGCTCGATGCACGGGTTGCCACCGCTGTGAAATCTCTTGTACCAAC
TTCAACGATGGCTCAGTAGGGACATTCTTCTCCCGTATCAAAATCCATCGCAATTATTTCTTTGGCGATAACGGGGTTGG
CTCTGGTGGCGGCCTGTATGGCGATCTCAACTATACCGCGGACACCTGCCGTCAATGCAAAGAACCGCAATGCATGAATG
TCTGCCCGATTGGTGCGATTACCTGGCAACAGGAAGAAGGCTGTATTACCGTCGATCATAAACGTTGTATTGGCTGTAGC
GCCTGTACGACGGCGTGCCCGTGGATGATGGCCACCGTAAATACTGAAAGTAAAAAATCCTCGAAATGTGTGTTATGCGG
TGAATGCGCAAACGCCTGCCCAACAGGGGCGTTAAAAATAATCGAGTGGAAAGATATTACTGTGTGA

Upstream 100 bases:

>100_bases
TATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAGTTGAATGCTTAATATCAATCTGCTGAATTGTCAGCACTGTGTTT
GCGAAGAGGATGCGAAATAA

Downstream 100 bases:

>100_bases
ATCTTGCAAAGGAAAAAATCATGGCTAACGGTTGGACAGGTAATATATTAAGAGTCAATCTCACGACAGGAAATATTACC
CTCGAAGATTCCAGTAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Sequences:

>Translated_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>Mature_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=208, Percent_Identity=99.5192307692308, Blast_Score=426, Evalue=1e-121,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=32.6666666666667, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787122, Length=150, Percent_Identity=31.3333333333333, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=31.055900621118, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082179, Length=163, Percent_Identity=26.9938650306748, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=30.1282051282051, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367345, Length=164, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787478, Length=167, Percent_Identity=26.3473053892216, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=24.1758241758242, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787749, Length=155, Percent_Identity=24.5161290322581, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22368; Mature: 22368

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHEEEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHEEEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]