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The map label for this gene is fliR

Identifier: 218699489

GI number: 218699489

Start: 1183058

End: 1183777

Strand: Reverse

Name: fliR

Synonym: ECIAI39_1106

Alternate gene names: 218699489

Gene position: 1183777-1183058 (Counterclockwise)

Preceding gene: 218699490

Following gene: 218699488

Centisome position: 23.07

GC content: 46.53

Gene sequence:

>720_bases
GTGCTGGCGCTCATTTCTACCGCGCCAATTCTGAGCGAACGCAGCGTGCCGAAACGGGTAAAACTGGGTCTGGCAATGAT
GATCACGTTCGCCATTGCCCCATCATTACCTGCCAACGATGTTCCTGTTTTTTCGTTCTTTGCTCTGTGGCTGGCCGTGC
AGCAGATCCTGATCGGCATTGCGCTTGGTTTTACCATGCAATTTGCCTTTGCCGCTGTGCGAACCGCTGGCGAAATTATC
GGTCTGCAAATGGGGCTGTCATTTGCGACATTTGTCGATCCTAGCAGCCATCTCAATATGCCCGTTTTAGCGCGCATCAT
GGATATGCTGGCATTACTGCTGTTCCTGACATTTAACGGTCATTTATGGTTGATTTCACTGCTGGTCGATACCTTTCACA
CCCAGCCGATTGGTGGTGAACCGTTGAACAGCAATGCGTTTCTGGCACTTACCAAAGCAGGGAGTTTGATTTTCCTTAAC
GGGCTGATGCTGGCGTTACCGCTCATTACTCTGTTGCTGACCCTGAATCTGGCATTAGGTTTACTGAATCGTATGGCCCC
GCAATTATCCATTTTTGTTATTGGATTTCCATTAACTCTGACTGTCGGCATCTCTTTAATGGCGGCATTAATGCCGTTAA
TTGCGCCTTTTTGCGAACATTTATTCAGTGAAATTTTTAATTTGCTGGCTGATATTATTAGTGAATTACCATTAATATAA

Upstream 100 bases:

>100_bases
CTAACCTGCCGTATATCATCGGGTAGCCCGAACAATGATGCAGGTGACAAGCGATCAATGGCTTTCCTAGTTAAGCCTGT
ACTTCTGGCCGTTACTGCGC

Downstream 100 bases:

>100_bases
TTCCGTAACGTTTATCATGCTACCCTAAGGATTATCCGAAAAATAATATCTGCGAACATCTTCCAGGATACTCCTGTAGC
GAAATATTTGTTTTAAGCTC

Product: flagellar export pore protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
GLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLN
GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI

Sequences:

>Translated_239_residues
MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
GLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLN
GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI
>Mature_239_residues
MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
GLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLN
GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=239, Percent_Identity=98.744769874477, Blast_Score=451, Evalue=1e-128,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 25800; Mature: 25800

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGI
CEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
HLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALG
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI
HHHHHCCHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGI
CEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
HLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALG
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI
HHHHHCCHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8282695; 9097040; 9278503 [H]