Click here to switch to the map view.

The map label for this gene is ompD [H]

Identifier: 218699474

GI number: 218699474

Start: 1171629

End: 1172756

Strand: Reverse

Name: ompD [H]

Synonym: ECIAI39_1091

Alternate gene names: 218699474

Gene position: 1172756-1171629 (Counterclockwise)

Preceding gene: 218699475

Following gene: 218699473

Centisome position: 22.85

GC content: 42.82

Gene sequence:

>1128_bases
ATGTGCTTTTTTTGGATAACAGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAA
AGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAATTTATAATAAAAATGGCAATA
AAGTTGAGCTATACGGCAAGATGGTTGGTGAGCGCATTCTGACCGACCGTGAAAATGGTGAAAAAGGCGATAATTCTCAA
GATACCTCTTATGCCCGTGTAGGCGTGAAAGGTGAAACTCAGATCAACCCTGAACTGACTGGTTACGGTCAGTTTGAACT
AGACCTGGAAGCATCAAACAGACACAACCCTGACCAAACTCGTTTGGCATATGCTGGTTTGAGTTACAAAGATTTTGGTT
CATTCGACTACGGTCGTAATGTCGGTGTCGCGTATGATGCAGAAGCATTTACTGATATGTTTGTTGAGTGGGGCGGTGAC
TCATGGGCTGGTACTGACCTGTTCATGACCAACCGTACCAACGGTGTTGCAACCTATCGTAACACAGATTTCTTTGGCAT
GGTTGAAGGTCTAAATTTTGCTCTGCAATATCAGGGTAAAAATGAAGGTACAGGCAACTACAAAGCAAATGGCGATGGCC
ATGGTTTATCTGCAACTTACACTATTGACGGTTTCTCATTTGCTGGTGCTTATGCAAACTCTGACCGTACTGATTGGCAG
TCTGGTGATGGTAAAGGCGAAAGAGCCGAAGTTTGGGCGTTGTCAACAAAATATGACGCTAACAATGTCTATGCTGCTGT
GATGTACGGTGAATCTCACAACATGAATTCCGACGACGGTGATGTTGTGAACAAAACACAAAACTTCGAAGCTGTTCTGC
AATATCAGTTCGACTTTGGTCTGCGTCCATCCATCGGTTACTCCTATTCTAAAGCACTGGACGTAGCAGGTTACAAAGAT
TCTGATCGTCTGAACTATATTGAAATCGGTACCTGGTATTACTTCAATAAGAATATGAACGTATATACCGCTTATCAGAT
CAACCTGCTTGATAAGAGTGATTATGTTCTCGCTCATGGACTGAACACCGACGACCAACTGGCAGTTGGTATCGTCTACC
AGTTCTAA

Upstream 100 bases:

>100_bases
TGAATTATATTAAATAGATTAGAAACATTTTGAAATCTTTTAAATACATTTGTTGCATGTAATCTTTAAAATAAAATGAA
CTTCATAGAATAGTATCCAA

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGAGGCGTGTTACTGTAAAACATAACACCAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTT
ATTGGCATTTCATCTCCATC

Product: outer membrane protein N (porin)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGKMVGERILTDRENGEKGDNSQ
DTSYARVGVKGETQINPELTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYGRNVGVAYDAEAFTDMFVEWGGD
SWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQ
SGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKD
SDRLNYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF

Sequences:

>Translated_375_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGKMVGERILTDRENGEKGDNSQ
DTSYARVGVKGETQINPELTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYGRNVGVAYDAEAFTDMFVEWGGD
SWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQ
SGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKD
SDRLNYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF
>Mature_375_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGKMVGERILTDRENGEKGDNSQ
DTSYARVGVKGETQINPELTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYGRNVGVAYDAEAFTDMFVEWGGD
SWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQ
SGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKD
SDRLNYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=360, Percent_Identity=53.6111111111111, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=54.3478260869565, Blast_Score=355, Evalue=3e-99,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=51.0695187165775, Blast_Score=340, Evalue=7e-95,
Organism=Escherichia coli, GI1787641, Length=382, Percent_Identity=53.4031413612565, Blast_Score=330, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41939; Mature: 41939

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEHH
MVGERILTDRENGEKGDNSQDTSYARVGVKGETQINPELTGYGQFELDLEASNRHNPDQT
HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCCEECCEEEEEEEECCCCCCCCHH
RLAYAGLSYKDFGSFDYGRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYR
EEEEECCCHHCCCCCCCCCCCCEEECHHHHHHHHEEECCCCCCCCEEEEECCCCCEEEEE
NTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQ
CCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCEEEEEEECCCEEECCCCCCCCCCCC
SGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFG
CCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
LRPSIGYSYSKALDVAGYKDSDRLNYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLAHG
CCCCCCCCHHHEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEC
LNTDDQLAVGIVYQF
CCCCCCEEEEEEEEC
>Mature Secondary Structure
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEHH
MVGERILTDRENGEKGDNSQDTSYARVGVKGETQINPELTGYGQFELDLEASNRHNPDQT
HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCCEECCEEEEEEEECCCCCCCCHH
RLAYAGLSYKDFGSFDYGRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYR
EEEEECCCHHCCCCCCCCCCCCEEECHHHHHHHHEEECCCCCCCCEEEEECCCCCEEEEE
NTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQ
CCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCEEEEEEECCCEEECCCCCCCCCCCC
SGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFG
CCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
LRPSIGYSYSKALDVAGYKDSDRLNYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLAHG
CCCCCCCCHHHEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEC
LNTDDQLAVGIVYQF
CCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA