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The map label for this gene is intQ [H]

Identifier: 218699265

GI number: 218699265

Start: 918983

End: 919393

Strand: Reverse

Name: intQ [H]

Synonym: ECIAI39_0871

Alternate gene names: 218699265

Gene position: 919393-918983 (Counterclockwise)

Preceding gene: 218699266

Following gene: 218699264

Centisome position: 17.91

GC content: 44.28

Gene sequence:

>411_bases
ATGACCATGCTTGGAAAGCAACATTCTGTAGAGGTGAAGCAGAGGGAATATGGGAGAACTGCTGTGCATAAATGCACTTT
TGTTTTTAGTCCTCAGGTAACAAAACAGCAGCAGTTGTCCGGACCTCACTACAAGGTTGACTCCATCAGGGAGTCATGGA
CAAGTATCTTAAAACGCGCAGGTCTGAGACACAGAAAATCGTACCAATCCAGGCATACTTATGCATGCTGGTCACTTGCC
GCAGGAGCTAATCCTAGTTTTATCGCAAGCCAGATGGGCCACACAAACGCACAAATGGTATTCAATGTTTACGGAGCATG
GATGAAAGACAACAATCACGAACAGATAGAACTCCTTAACAAAAGACTATCTGAAAGTGTCCCATGTATGCCCCATAAGA
AAGTTGGGTAA

Upstream 100 bases:

>100_bases
ATCTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGGCGGTTCAATCTGGTTCAACCAGCTATTGATG
CTCTTAAAAGCCAGGCGGAA

Downstream 100 bases:

>100_bases
AATAAAAACTTGCAAAATCAGTTAGTTTACCCTTAATCCCTGTCACGTTACGCGCGTGGCAGAGGCGTTACGGATTGCTG
AAACCGCAACGGACAGACGG

Product: putative lambdoid prophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLA
AGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNKRLSESVPCMPHKKVG

Sequences:

>Translated_136_residues
MTMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLA
AGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNKRLSESVPCMPHKKVG
>Mature_135_residues
TMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAA
GANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNKRLSESVPCMPHKKVG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=119, Percent_Identity=52.1008403361345, Blast_Score=135, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 15576; Mature: 15445

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRA
CCCCCCCCCCHHHHHHHCHHHHHHEEEEECCCCCHHHHHCCCCEEHHHHHHHHHHHHHHH
GLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLN
CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
KRLSESVPCMPHKKVG
HHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRA
CCCCCCCCCHHHHHHHCHHHHHHEEEEECCCCCHHHHHCCCCEEHHHHHHHHHHHHHHH
GLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLN
CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
KRLSESVPCMPHKKVG
HHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]