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The map label for this gene is xerC [H]

Identifier: 218698089

GI number: 218698089

Start: 5004471

End: 5005478

Strand: Reverse

Name: xerC [H]

Synonym: EC55989_4899

Alternate gene names: 218698089

Gene position: 5005478-5004471 (Counterclockwise)

Preceding gene: 218698090

Following gene: 218698075

Centisome position: 97.1

GC content: 49.6

Gene sequence:

>1008_bases
TTGACGATCCCACGCCGCTTTTTGGAGATGACGTTCCCTTTAATAACCCTCATCTCTTGCTCAGTGAAGGAGAAGACACT
CATGACCTTTGAACAGCTCCTGGAAGAGTATTTTTTTGCCCGTCTGCTGCGCCCTGATACCCAGAGCTGCTATTGCACGG
CGGTAAATCAGTATACCCACTGGCGCAACGTCCTACCCGCCGAAGTCACACCGCATATGGTACTGGAGTGGCGCCATTAC
CTGCTAAATGTGCGCTGTATCAAGCCGGTGAGCTGGAATCACTATATGCGCCATATGCGAGCCTTGTATAACTTCGCCAT
TGAACAGGGGCTACTGGAGCAGTTCATCAATCCATTCCAGAAAACATCGCTGCGGGAATCTCGTAAGAAAAAGAAAACCC
TGACCCGCGAGCAAATCCTCGCATCCCGCAAAGTGCTGAACCAGTTTATCGAACGGGAAAAAATGCAGCGTGGCTATCGT
TCGCCTTTATATCCGGCATGGTTTTGGCTGACCGTAGTCGAAACCTTCAACTACACCGCTATCCGGCTGAATCAGCTTAT
TCACCTGCGGGTCAGGGATATCGATCTGGTCCATGACACGCTGTTTATTCAGATCGAAGGCAGTAAAAGCCATGATGAAC
ATATTGTTCCCATCGCCTCCCGACTGCGGCCCTATCTGGAGCATCTGCTTGAAGAAGCGAAAACAAAGGGAATACGGGCT
GACGATCAGTTGTTCAACATCAATCGTTTCAGTCGGCGGACGCTACGCCAGGGTAAACCGATGACAGAAAATCAGGTGAG
TTATTTCTTTGCCAAACTCAGCGATGCCTGCCACAGCCGTTTTCCATCACATCGCTACCGTCATACCGTTGCCACAGAAT
TGATGCAGAAACCGGAGCAAAATTTGTATGTCACGCAGAAACTACTCGGACACCGCGATATTAAGGTGACGCTCAGCTAT
ATTGAACACAATGTCGAGATGCTCAGAAGTTGCGTGGAGAGAGATTGA

Upstream 100 bases:

>100_bases
CAGAACCTGAATCTTCACCGAAAACAAAAAAACGGCCTCAACATCTGGCACTGCGCCGTTGTCGGCCCACGCCGTTGTTC
ACGTCTGAAGGGATATCTGC

Downstream 100 bases:

>100_bases
CAAAACAGGGAGTGAGTGAAAAGATCCGGCCCGAGGCTTTATAAACAAAAAAAGCCGGAGATGCGGCCATTTTGTAGTTG
CCGTCAACGTCCAGCTTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTIPRRFLEMTFPLITLISCSVKEKTLMTFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHWRNVLPAEVTPHMVLEWRHY
LLNVRCIKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVLNQFIEREKMQRGYR
SPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTLFIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRA
DDQLFNINRFSRRTLRQGKPMTENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSY
IEHNVEMLRSCVERD

Sequences:

>Translated_335_residues
MTIPRRFLEMTFPLITLISCSVKEKTLMTFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHWRNVLPAEVTPHMVLEWRHY
LLNVRCIKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVLNQFIEREKMQRGYR
SPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTLFIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRA
DDQLFNINRFSRRTLRQGKPMTENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSY
IEHNVEMLRSCVERD
>Mature_334_residues
TIPRRFLEMTFPLITLISCSVKEKTLMTFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHWRNVLPAEVTPHMVLEWRHYL
LNVRCIKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVLNQFIEREKMQRGYRS
PLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTLFIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRAD
DQLFNINRFSRRTLRQGKPMTENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI
EHNVEMLRSCVERD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40220; Mature: 40089

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPRRFLEMTFPLITLISCSVKEKTLMTFEQLLEEYFFARLLRPDTQSCYCTAVNQYTH
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH
WRNVLPAEVTPHMVLEWRHYLLNVRCIKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQ
HHCCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTSLRESRKKKKTLTREQILASRKVLNQFIEREKMQRGYRSPLYPAWFWLTVVETFNYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHH
IRLNQLIHLRVRDIDLVHDTLFIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRA
HHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DDQLFNINRFSRRTLRQGKPMTENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQ
CHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
NLYVTQKLLGHRDIKVTLSYIEHNVEMLRSCVERD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIPRRFLEMTFPLITLISCSVKEKTLMTFEQLLEEYFFARLLRPDTQSCYCTAVNQYTH
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH
WRNVLPAEVTPHMVLEWRHYLLNVRCIKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQ
HHCCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTSLRESRKKKKTLTREQILASRKVLNQFIEREKMQRGYRSPLYPAWFWLTVVETFNYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHH
IRLNQLIHLRVRDIDLVHDTLFIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRA
HHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DDQLFNINRFSRRTLRQGKPMTENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQ
CHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
NLYVTQKLLGHRDIKVTLSYIEHNVEMLRSCVERD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA