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The map label for this gene is tetC [H]

Identifier: 218698049

GI number: 218698049

Start: 4975373

End: 4976041

Strand: Reverse

Name: tetC [H]

Synonym: EC55989_4859

Alternate gene names: 218698049

Gene position: 4976041-4975373 (Counterclockwise)

Preceding gene: 218698051

Following gene: 218698047

Centisome position: 96.53

GC content: 32.59

Gene sequence:

>669_bases
ATGTTCTTAAGATTGTCACGACCACATCATCATGATACCATAAACATACTGACGGTATGTTATTTTAAATCTATCATGGA
AAATAAAAATCATCAACAAGAAAATTTTAAGAGTACCTATCAATCACTGGTTAACTCAGCACGAATATTGTTTGTTGAAA
AAGGCTATCAAGCTGTTTCAATAGATGAGATCTCGGGAAAAGCGTTGGTGACCAAAGGTGCCTTTTATCATCACTTTAAA
AATAAAAAACAATTACTCAGTGCCTGTTATAAGCAGCAATTAATTATGATTGATGCCTACATCACAACAAAAACTGATTT
AACAAATGGTTGGTCTGCCTTAGAAAGTATATTTGAACATTATCTTGATTATATTATTGATAATAATAAAAACCTTATCC
CTATCCAAGAAGTGATGCCTATCATTGGTTGGAATGAACTTGAAAAAATTAGCCTTGAATACATTACTGGTAAGGTAAAC
GCCATTGTCAGCAAATTGATCCAAGAGAACCAACTTAAAGCTTATGATGATGATGTGCTTAAAAACTTACTCAATGGCTG
GTTTATGCATATCGCAATACATGCGAAAAACCTAAAAGAGCTTGCCGATAAAAAAGGCCAATTTATTGCTATTTACCGCG
GCTTTTTATTGAGCTTGAAAGATAAATAA

Upstream 100 bases:

>100_bases
TAACCGTTGTATGAAACTGCTTATCATCATATCTTAATTGGATGTTATTAGCTTTATTTTGATAGCGAGAATGCTGTTCA
ATATACATAAAATAACCTAA

Downstream 100 bases:

>100_bases
AATAGATAGGTTTTATTTGAAGCTAAATCTTCTTTATCGTAAAAAATGCCCTCTTGGGTTATCAAGAGGGTCATTATATT
TCGCGGAATAACATCATTTG

Product: putative Transcriptional regulator

Products: NA

Alternate protein names: ORFL [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFK
NKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVN
AIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK

Sequences:

>Translated_222_residues
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFK
NKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVN
AIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK
>Mature_222_residues
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFK
NKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVN
AIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25771; Mature: 25771

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVS
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
IDEISGKALVTKGAFYHHFKNKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEH
EECCCCCEEEECCHHHHHHCCHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHH
YLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVL
HHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
KNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCC
>Mature Secondary Structure
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVS
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
IDEISGKALVTKGAFYHHFKNKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEH
EECCCCCEEEECCHHHHHHCCHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHH
YLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVL
HHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
KNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]