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The map label for this gene is yjdK

Identifier: 218697830

GI number: 218697830

Start: 4736834

End: 4737130

Strand: Direct

Name: yjdK

Synonym: EC55989_4620

Alternate gene names: 218697830

Gene position: 4736834-4737130 (Clockwise)

Preceding gene: 218697829

Following gene: 218697831

Centisome position: 91.89

GC content: 34.34

Gene sequence:

>297_bases
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Upstream 100 bases:

>100_bases
TTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAATTTTTGCGTCCCCAGAGCATTCA
ATATTGATAGGAGTCATATT

Downstream 100 bases:

>100_bases
CCAGGAAGGATAAGAAGAACATAAAAAATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATC
CTTTGTCATTATCTGGTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Sequences:

>Translated_98_residues
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK
>Mature_98_residues
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790570, Length=98, Percent_Identity=100, Blast_Score=199, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJDK_ECO57 (P0AF62)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C86108
- PIR:   F91267
- RefSeq:   NP_290761.1
- RefSeq:   NP_313137.1
- ProteinModelPortal:   P0AF62
- EnsemblBacteria:   EBESCT00000028225
- EnsemblBacteria:   EBESCT00000058299
- GeneID:   914192
- GeneID:   959996
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5730
- KEGG:   ecs:ECs5110
- GeneTree:   EBGT00050000010268
- HOGENOM:   HBG468978
- OMA:   DDYFRQI
- ProtClustDB:   CLSK880850
- BioCyc:   ECOL83334:ECS5110-MONOMER
- InterPro:   IPR022597

Pfam domain/function: PF11080 DUF2622

EC number: NA

Molecular weight: Translated: 11468; Mature: 11468

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTS
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEH
LAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK
HHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCC
>Mature Secondary Structure
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTS
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEH
LAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK
HHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796