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The map label for this gene is kdgT

Identifier: 218697624

GI number: 218697624

Start: 4483402

End: 4484376

Strand: Direct

Name: kdgT

Synonym: EC55989_4388

Alternate gene names: 218697624

Gene position: 4483402-4484376 (Clockwise)

Preceding gene: 218697623

Following gene: 218697625

Centisome position: 86.97

GC content: 52.82

Gene sequence:

>975_bases
ATGACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG
GATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCA
CCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGTGTGGTTTTTTTGCATGGGGGCGTCAATAAAATTAAGCGCG
ACGGGAACGGTATTGCGTAAATCCGGTACGCTGGTGGTAACAAAAATTGCCGTCGCGTGGGTGGTTGCGGCAATTGCCTC
GCGCATTATTCCGGAACATGGTGTTGAAGTTGGATTCTTTGCCGGACTTTCAACGCTGGCGCTGGTGGCGGCGATGGATA
TGACCAATGGCGGACTTTACGCTTCCATCATGCAGCAGTACGGCACAAAAGAAGAAGCTGGGGCATTTGTGTTGATGTCG
TTGGAGTCCGGGCCGCTCATGACGATGATTATTCTGGGCACTGCAGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGG
CGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTACGAGAATTTTTCAGCAAAGCGGTGC
AAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGG
ATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGG
CACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGT
TTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTC
TATCTGGTCACGTAA

Upstream 100 bases:

>100_bases
AAAAATAAAACAGTGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAA
CACTGATGCTCCATTGAGGA

Downstream 100 bases:

>100_bases
AGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGA
ACTAACGTTCGTCCGGTTTG

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSA
TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMS
LESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLG
ILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATGHCDFDSGANSYL
YLVT

Sequences:

>Translated_324_residues
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSA
TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMS
LESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLG
ILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATGHCDFDSGANSYL
YLVT
>Mature_323_residues
THQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSAT
GTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSL
ESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGI
LLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATGHCDFDSGANSYLY
LVT

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=293, Percent_Identity=100, Blast_Score=572, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33552; Mature: 33421

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEC
TVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFF
HHHHHHHHHHHHCCCEEEECCCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHH
AGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC
EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLG
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
ILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPA
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCH
ATSLVATGHCDFDSGANSYLYLVT
HHHHEEECCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
THQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITG
CCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEC
TVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFF
HHHHHHHHHHHHCCCEEEECCCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHH
AGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC
EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLG
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
ILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPA
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCH
ATSLVATGHCDFDSGANSYLYLVT
HHHHEEECCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA