BacMap

Definition	Escherichia coli 55989, complete genome.
Accession	NC_011748
Length	5,154,862

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The map label for this gene is ygcW

Identifier: 218696372

GI number: 218696372

Start: 3115476

End: 3116261

Strand: Reverse

Name: ygcW

Synonym: EC55989_3047

Alternate gene names: 218696372

Gene position: 3116261-3115476 (Counterclockwise)

Preceding gene: 218696375

Following gene: 218696371

Centisome position: 60.45

GC content: 44.91

Gene sequence:

>786_bases
ATGTCAATCGAATCTCTCAATGCGTTCTCAATGGATTTTTTCTCACTGAAAGGTAAAACCGCAATTGTTACCGGTGGGAA
TAGCGGTTTAGGCCAGGCATTTGCCATGGCGTTGGCCAAAGCTGGCGCAAATATCTTTATTCCTAGTTTCGTCAAAGATA
ACGGCGAAACAAAGGAAATGATTGAAAAACAGGGTGTTGAGGTGGACTTCATGCAGGTGGATATCACCGCAGAAGGCGCG
CCGCAGAAGATTATCGCTGCTTGCTGTGAGCGTTTCGGTACAGTTGATATTCTGGTAAACAATGCCGGTATTTGTAAGCT
GAATAAGGTGCTGGACTTCGGTCGTGCCGACTGGGATCCGATGATTGATGTGAACCTGACCGCCGCATTCGAGTTAAGCT
ATGAAGCGGCAAAAATTATGATCCCGCAGAAAAGCGGCAAAATTATTAATATCTGTTCATTGTTCTCTTACTTAGGTGGA
CAATGGTCACCTGCATATTCTGCCACTAAACATGCTCTTGCCGGATTCACCAAAGCTTATTGTGATGAACTAGGTCAATA
TAATATTCAGGTAAATGGTATTGCCCCTGGCTATTATGCAACAGATATTACGCTGGCGACACGCAGTAATCCAGAAACCA
ATCAGCGCGTTCTTGATCATATTCCGGCAAACCGTTGGGGCGATACTCAGGATTTAATGGGCGCAGCTGTATTCCTCGCA
AGTCCGGCTTCAAATTATGTCAATGGGCATTTATTAGTGGTCGATGGTGGTTATTTAGTGCGCTAA

Upstream 100 bases:

>100_bases
AAATTATCTCCAGTTACCAGAGATAATGAGAAAGGTAACTTCCCTCTCGCGGGGGAAGTTACCTTTCTTTTTTTTTGCCT
TACGGAAATTGGAGCTAACT

Downstream 100 bases:

>100_bases
TCCATAACGGTGGTTTCTGTTTTCTCTTATTAATGATTATTCCATTTTTATTATCAGGAAGGAATTACTATGTCTTTATC
TCGCGCAGCGATTGTCGACC

Product: putative deoxygluconate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGA
PQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGG
QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
SPASNYVNGHLLVVDGGYLVR

Sequences:

>Translated_261_residues
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGA
PQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGG
QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
SPASNYVNGHLLVVDGGYLVR
>Mature_260_residues
SIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAP
QKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQ
WSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLAS
PASNYVNGHLLVVDGGYLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=30.1255230125523, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=28.9156626506024, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=29.9242424242424, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=26.6129032258064, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=29.2181069958848, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=31.25, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=29.4354838709677, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI31542939, Length=220, Percent_Identity=29.0909090909091, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=30.5263157894737, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=25.6, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=30, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=29.2079207920792, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=25.8064516129032, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=29.2576419213974, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=29.9610894941634, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=25.2, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=26.6129032258064, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7657478, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=99.6168582375479, Blast_Score=538, Evalue=1e-154,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=44.4, Blast_Score=202, Evalue=1e-53,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=40.8, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.4677419354839, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=34.9397590361446, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=34.8, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.515625, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=28.1124497991968, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=26.5060240963855, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=29.5546558704453, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=27.8625954198473, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=25.2631578947368, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=32.2448979591837, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=30.6772908366534, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=33.6032388663968, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=32.8125, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=30.952380952381, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.0322580645161, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.2681992337165, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=30.1115241635688, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.4182509505703, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.1787072243346, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.6513409961686, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=25.9109311740891, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=30.7116104868914, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=30.4832713754647, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=29.1187739463602, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=29.6153846153846, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=27.9693486590038, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=28.6821705426357, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=26.8482490272374, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=27.7992277992278, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.1526717557252, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=30.5263157894737, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=27.9245283018868, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=30.6201550387597, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=25.9541984732824, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=24.8, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=201, Percent_Identity=28.8557213930348, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=28.2722513089005, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=24.4, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=28.7958115183246, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=27.363184079602, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=25.296442687747, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=26.8, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=25.2631578947368, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=205, Percent_Identity=30.2439024390244, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=31.7708333333333, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=27.1653543307087, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=28.0487804878049, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320089, Length=208, Percent_Identity=26.9230769230769, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=32.3886639676113, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.0483870967742, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=32.5396825396825, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=31.3253012048193, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=30.5555555555556, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.9156626506024, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=28.968253968254, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=31.7948717948718, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24649181, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=26.6331658291457, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24640442, Length=217, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=185, Percent_Identity=28.6486486486486, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24644337, Length=176, Percent_Identity=27.8409090909091, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=26.1780104712042, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28100; Mature: 27969

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEM
CCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCHHHH
IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP
HHHCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHCCCCCCCC
MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY
EEEEEEEEEEEEEECEEEEEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
HHHHCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEE
SPASNYVNGHLLVVDGGYLVR
CCCCCCCCCEEEEEECCEEEC
>Mature Secondary Structure 
SIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEM
CCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCHHHH
IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP
HHHCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHCCCCCCCC
MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY
EEEEEEEEEEEEEECEEEEEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
HHHHCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEE
SPASNYVNGHLLVVDGGYLVR
CCCCCCCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9205837 [H]