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The map label for this gene is ygcL [H]

Identifier: 218696358

GI number: 218696358

Start: 3098597

End: 3100228

Strand: Reverse

Name: ygcL [H]

Synonym: EC55989_3033

Alternate gene names: 218696358

Gene position: 3100228-3098597 (Counterclockwise)

Preceding gene: 218696359

Following gene: 218696357

Centisome position: 60.14

GC content: 50.49

Gene sequence:

>1632_bases
TTGATATACAGAAAAGGATGGAAGGATGGACAACCGACCTGGGATGGTCTTTTTTACGAGAGGATGCGTATGAACTCGTT
TTCACTTCTGACAACCCCGTGGTTGCCCGTTCGTTTTAAAGACGGAACGACAGGCAAACTGGCACCAGTCGATCTGGCTG
ATGAAAATGTTGTCGATATCGCTGCGCCGCGGGCAGATCTCCAGGGGGCGGCCTGGCAGTTTTTGTTGGGGCTACTACAA
ACCAGCTTCGCGCCCAAAAATCACGGTCGTTGGGATGATATCTGGGAAGACGGACTGGAGGCTGAAAAGCTACGGGAAGC
ATTGCTGTCCTTAGAACACGCTTTCCAGTTTGGGGCAGATTCCCCTTCATTTATGCAGGATTTCGAGGCGCTCAAGGGAG
ATAAAGTTCAGGTCGCTTCGCTACTGCCTGAGATTCCCGGCGCTCAAACAACGAAGTTTAATAAAGACCACTTTATTAAG
CGTGGCGTGACTGAACACGTATGCCCTCATTGTTCCGCGTTAGCTCTGTTCTCCCTACAGTTAAATGCGCCATCAGGCGG
CAAAGGCTATCGCACCGGTTTGCGCGGCGGTGGGCCGATGACCACTCTGATTGAATTACAGGAATATCAAGGCAATCAAC
AAACGCCCTTGTGGCGCAAACTGTGGCCCAATGTGATGCCGCAGGATGAAGCCGACTTACCGCTACCCAAAAAATTTGAC
GATCTGGTTTTCCCCTGGCTTGGCCCGACGCGAACCAGCGAACTGGCCGGTGCGGTGGTAACCCATGATCAGGTCAATAA
ACTCCAGGCTTACTGGGGAATGCCGCGCCGTATTCGTATTGATTTTAATACCACGACAGTCGGCAACTGCGATATTTGCG
GTGAACAGAGCGACGCGCTCCTGAGCCTGATGACGACCAAAAATTACGGTGCGAATTATGCCATGTGGCAGCATCCCTTA
ACGCCTTACCGTATACCACTTAAAGAGGGTGGCGAGTTTTACTCGGTCAAACCACAACCGGGCGGTTTAATCTGGCGCGA
CTGGTTAGGCCTTATCGAAACGGGTAAATCAGAAAACAATACGGAACTTCCCGCGCTGGTGGTGAAACTCTTTAATGCCA
GCAGTCTGAAACAGGCAAAAGTAGGCCTGTGGGGATTTGGCTATGATTTCGACAACATGAAAGCGCGCTGTTGGTACGAA
CACCATTTCCCGCTGCTGCTCAAGAAAAAAGAAGGCCAGATACCGAAACTGCGTCTGGCTGCGCAAACGGCTTCACGGAT
TCTAAGTCTGTTACGAAGTGCATTGAAAGAAGCGTGGTTCTCCGATCCAAAAGGTGCACGGGGTGATTTCAGTTTTGTGG
ATATCGACTTCTGGAACAAAACTCAGCATCGCTTCCTGAGGTTAGTGCGCCAAATTGAAGAAGGTCAGGATGCGGACGAA
TTACTCGGCAAATGGCAAAAGGAAATTTGGTTATTCGCGCGTCAGGATTTTGACGAGCGTGTATTCACCAATCCATATGA
GCCTGTTGATTTGAAACGCGTTATGACCGCGCGCAAGAAATATTTCACAACATCGGCGGAGAAGCAAAGTGCTAAAGCCG
CCAGGGAGAAAAAGCAGGAGGCTGCTGAATGA

Upstream 100 bases:

>100_bases
GTGATTTTAGTCACCGATGACGAAAGTTGCGGGTATTCGGCCAGGGAGGGATTGATTGGCAAGGTTGGTTGAGATGTCTG
CGACAGGACTCTCTGAATAG

Downstream 100 bases:

>100_bases
GTATTGTAAAAGAGGAGCACAAAGCCACGCTGCGCAAATGGCACGAGGAATTGCAGGAGAAACGTGGCGAACGTGCCAGT
CTGCGGCGTAGTACGACGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MIYRKGWKDGQPTWDGLFYERMRMNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQ
TSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIK
RGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFD
DLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPL
TPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYE
HHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADE
LLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE

Sequences:

>Translated_543_residues
MIYRKGWKDGQPTWDGLFYERMRMNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQ
TSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIK
RGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFD
DLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPL
TPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYE
HHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADE
LLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>Mature_543_residues
MIYRKGWKDGQPTWDGLFYERMRMNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQ
TSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIK
RGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFD
DLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPL
TPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYE
HHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADE
LLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=516, Percent_Identity=19.9612403100775, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 61852; Mature: 61852

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYRKGWKDGQPTWDGLFYERMRMNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDI
CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCEEECCCCCCCEEEE
AAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGAD
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
SPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQ
CHHHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCEEEEEEEE
LNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFD
ECCCCCCCCCCCCCCCCCCHHHEEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHH
DLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDAL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCCCCHHH
LSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENN
EEEEECCCCCCCCEEECCCCCCEEEECCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCC
TELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLA
CHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHH
AQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
LLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQE
HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AAE
HCC
>Mature Secondary Structure
MIYRKGWKDGQPTWDGLFYERMRMNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDI
CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCEEECCCCCCCEEEE
AAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGAD
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
SPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQ
CHHHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCEEEEEEEE
LNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFD
ECCCCCCCCCCCCCCCCCCHHHEEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHH
DLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDAL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCCCCHHH
LSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENN
EEEEECCCCCCCCEEECCCCCCEEEECCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCC
TELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLA
CHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHH
AQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
LLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQE
HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AAE
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]