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The map label for this gene is higA [H]

Identifier: 218696309

GI number: 218696309

Start: 3054909

End: 3055394

Strand: Reverse

Name: higA [H]

Synonym: EC55989_2981

Alternate gene names: 218696309

Gene position: 3055394-3054909 (Counterclockwise)

Preceding gene: 218696310

Following gene: 218696308

Centisome position: 59.27

GC content: 46.71

Gene sequence:

>486_bases
TTGCAGAGTGGCTATGAGGGGGATTACGTGCAGACAGACGTCACGTTACTACAGAGAGAACAAAGAATGACTGCTAATGC
TGCACGCGCTGTTAAAGCAACAAGAGAACTGGTCAATGCAGTCCCCTTTCTGGGAGGCAGTGACTCAGAAGATGATTATC
GTGAAGCACTGGAACTGGTCGAATATTTGATTGAAGAAGATGACACCAATCCACTTATCGACTTTCTGGCGAGCCGCATT
GCAGAGTATGAAAACAACAACGAAAAGTTTGCAGAGTTCGACAAAGCCGTTGCGGCAATGCCGGTTGGCGTGGCGTTACT
TCGCACGTTGATTGATCAACATAATCTGACCTATGCGGATTTGAAGAACGAAATCGGCTCTAAATCCCTGGTCAGTCAGA
TTTTGTCTGGACAACGATCCCTGACAATATCCCACATTAAGGCACTTTCAGCCCGATTTGGCGTTAAGCCGGAATGGTTT
CTTTGA

Upstream 100 bases:

>100_bases
CCCATCGCCGGGCGCGACCCGCAAACGGAAGATCTGGCGCAGACGCAGCGTTGCTTGATAAAGGGGGATGTGCTTTATGG
GGTGAACCAGAACTGACTTT

Downstream 100 bases:

>100_bases
TTTTGACTGATGCCAAACCCCAGATTGCCCGATGCGCTGCGCTTATCGGGCCTTGTATTATCCCTCCAGTGCAGAGAAAA
TCGGCCAGTTTTCTCTGCCT

Product: putative HTH-type transcriptional regulator ygjM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQSGYEGDYVQTDVTLLQREQRMTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRI
AEYENNNEKFAEFDKAVAAMPVGVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWF
L

Sequences:

>Translated_161_residues
MQSGYEGDYVQTDVTLLQREQRMTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRI
AEYENNNEKFAEFDKAVAAMPVGVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWF
L
>Mature_161_residues
MQSGYEGDYVQTDVTLLQREQRMTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRI
AEYENNNEKFAEFDKAVAAMPVGVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWF
L

Specific function: Part of a toxin-antitoxin (TA) module. Functions as an mRNA interferase antitoxin [H]

COG id: COG5499

COG function: function code K; Predicted transcription regulator containing HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789464, Length=134, Percent_Identity=46.2686567164179, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 18015; Mature: 18015

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSGYEGDYVQTDVTLLQREQRMTANAARAVKATRELVNAVPFLGGSDSEDDYREALELV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
EYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPVGVALLRTLIDQHNLTYAD
HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
HHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQSGYEGDYVQTDVTLLQREQRMTANAARAVKATRELVNAVPFLGGSDSEDDYREALELV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
EYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPVGVALLRTLIDQHNLTYAD
HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
HHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]