Click here to switch to the map view.

The map label for this gene is ydhA

Identifier: 218695202

GI number: 218695202

Start: 1866711

End: 1867040

Strand: Reverse

Name: ydhA

Synonym: EC55989_1807

Alternate gene names: 218695202

Gene position: 1867040-1866711 (Counterclockwise)

Preceding gene: 218695203

Following gene: 218695201

Centisome position: 36.22

GC content: 45.45

Gene sequence:

>330_bases
ATGTCTATGAAAAAACTGTTACTGATCTGTTTGCCGGTGCTTCTCACCGGCTGTAGCGCGTTCAATCAACTGGTTGAGCA
CATGCAAACCGCTACGCTGGAATACCAGTGTGATGAAAAACCGTTGACGGTCAAACTGAATAATCCGCGCCAGGAAGTCA
GTTTTGTTTACGATAATCAACTACTGCATCTCAAACAGGGCATTTCAGCGTCTGGTGCACGTTACACTGACGGAATCTAT
GTTTTCTGGTCGAAAGGCGATGAAGCGACTGTCTATAAACGCGACCGCATCGTATTGAATAACTGTCAGTTACAAAATCC
ACAGCGTTGA

Upstream 100 bases:

>100_bases
TGATATCAGAGTTAACTGAATTTTTCTTACCGCGTCTGCCGTTACACTTGGAACGTTAGGGAGGGCGTATTGCCCTCCAG
ACCAGGAAAGTCTTCGGGAA

Downstream 100 bases:

>100_bases
GATTTTTCCAGGGGCGGCGCACAATAGCGTCACCCACTGACAATCCGTAAAGAAAACCATGTCTGATAACGACGAATTGC
AGCAAATCGCGCATCTGCGC

Product: lysozyme inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIY
VFWSKGDEATVYKRDRIVLNNCQLQNPQR

Sequences:

>Translated_109_residues
MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIY
VFWSKGDEATVYKRDRIVLNNCQLQNPQR
>Mature_108_residues
SMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYV
FWSKGDEATVYKRDRIVLNNCQLQNPQR

Specific function: Specifically inhibits C-type lysozymes [H]

COG id: COG3895

COG function: function code R; Predicted periplasmic protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor. Note=Anchored to the periplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mliC family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081949, Length=109, Percent_Identity=94.4954128440367, Blast_Score=199, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018660 [H]

Pfam domain/function: PF09864 DUF2091 [H]

EC number: NA

Molecular weight: Translated: 12495; Mature: 12363

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTVKLNNPRQEVSFVYDNQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHEEEEECCC
LLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
EEEECCCCCCCCCEECCCEEEEECCCCCEEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure 
SMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTVKLNNPRQEVSFVYDNQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHEEEEECCC
LLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
EEEECCCCCCCCCEECCCEEEEECCCCCEEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1356963 [H]