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The map label for this gene is rzpD

Identifier: 218695114

GI number: 218695114

Start: 1782114

End: 1782578

Strand: Reverse

Name: rzpD

Synonym: EC55989_1713

Alternate gene names: 218695114

Gene position: 1782578-1782114 (Counterclockwise)

Preceding gene: 218695115

Following gene: 218695112

Centisome position: 34.58

GC content: 52.9

Gene sequence:

>465_bases
ATGAACCGCGTACTGTGCGTGGTCATCATTGCCCTGCTGGCGGCCTGTGGTGCGCTTAGTCTGGGGCTGAATCATTACCG
TGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGTCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACA
TGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT
GCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCAC
CGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGCGCGAC
TGATAATAATGCAAAAACAACTTGAAGGGGCACAGCTATACATTCGAGAGCAATGCCTCAGATAA

Upstream 100 bases:

>100_bases
ATGGCTGAAAAATTATCCACCTGGAAGTTCATTCTTATCTGGCTGGTGTTTGTGATTATGGCCTCCGGTTATTTCATCGG
TCAGATACGCTGGTGGTGAA

Downstream 100 bases:

>100_bases
AAACCGGCCAAGGATAATCCGCTGAAGATTCGCCGGTGGCTAAAGTGTGCCAAGAGTTCAATTTACGCAATTACTCCTGT
CGATGCTATGCACCGTCTTT

Product: putative murein endopeptidase; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MNRVLCVVIIALLAACGALSLGLNHYRDNAITYKAQRDKNVRELKLANAAITDMQMRQRDVAALDAKYTKELADAKAEND
ALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRARLIIMQKQLEGAQLYIREQCLR

Sequences:

>Translated_154_residues
MNRVLCVVIIALLAACGALSLGLNHYRDNAITYKAQRDKNVRELKLANAAITDMQMRQRDVAALDAKYTKELADAKAEND
ALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRARLIIMQKQLEGAQLYIREQCLR
>Mature_154_residues
MNRVLCVVIIALLAACGALSLGLNHYRDNAITYKAQRDKNVRELKLANAAITDMQMRQRDVAALDAKYTKELADAKAEND
ALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRARLIIMQKQLEGAQLYIREQCLR

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=152, Percent_Identity=82.8947368421053, Blast_Score=250, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17174; Mature: 17174

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVLCVVIIALLAACGALSLGLNHYRDNAITYKAQRDKNVRELKLANAAITDMQMRQRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
VAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DTAERDYFTLRARLIIMQKQLEGAQLYIREQCLR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MNRVLCVVIIALLAACGALSLGLNHYRDNAITYKAQRDKNVRELKLANAAITDMQMRQRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
VAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DTAERDYFTLRARLIIMQKQLEGAQLYIREQCLR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]