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The map label for this gene is ydfO

Identifier: 218695113

GI number: 218695113

Start: 1781384

End: 1781794

Strand: Direct

Name: ydfO

Synonym: EC55989_1712

Alternate gene names: 218695113

Gene position: 1781384-1781794 (Clockwise)

Preceding gene: 218695090

Following gene: 218695121

Centisome position: 34.56

GC content: 30.66

Gene sequence:

>411_bases
ATGGATCAGGTAGTCATTTTTAAACAAATATTTGATAAAGTTCGAAACGATTTAAACTATCAATGGTTTTATTCTGAGCT
AAAACGTCACAATGTCTCACATTACATTTACTATTTAGCTACAGATAATGTTCATATTGTATTAAAAAATGATAATACAG
TGTTATTAAAGGGCCTAAAAAACATTGTGTCTGTCAAATTTTCAAAGGATAGGCATCTTATAGAAACGACCTCTAATAAG
CTGAAATCCAGTGAGATCACATTTCAGGAATACAGAAGAAACCTTGCTAAAGCAGGAGTTTTTCGGTGGGTTACAAATAT
CCACGAACAAAAAAGATATTACTATACCTTTGATAATTCATTACTCTTTACTGAAAACATACAGAGCACATCACAAATAT
TTCCACACTAA

Upstream 100 bases:

>100_bases
ACATAAATCATCAATAAAACATATAAAGGTCAGACCAGATTGAAACGATAAAAACGATCTTGCAAACTACGTGCCCTCAT
ACCATATGGAAGGTTTATCT

Downstream 100 bases:

>100_bases
ACCATAACGTCCGGTTTTTTCTACCCCAGCACCGGACTGGCTGACATAAAGAGCAACCCCACGTTAAGTTGACGCGTTAA
TAACCCGGTGTACATCGTTT

Product: conserved hypothetical protein; Qin prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATDNVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSSEITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTENIQSTSQIFPH

Sequences:

>Translated_136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATDNVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSSEITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTENIQSTSQIFPH
>Mature_136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATDNVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSSEITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTENIQSTSQIFPH

Specific function: Unknown

COG id: COG5562

COG function: function code R; Phage envelope protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybcV and ycgX [H]

Homologues:

Organism=Escherichia coli, GI87081931, Length=135, Percent_Identity=95.5555555555556, Blast_Score=265, Evalue=9e-73,
Organism=Escherichia coli, GI87081758, Length=135, Percent_Identity=78.5185185185185, Blast_Score=226, Evalue=6e-61,
Organism=Escherichia coli, GI1787408, Length=133, Percent_Identity=45.1127819548872, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009833
- ProDom:   PD021249 [H]

Pfam domain/function: PF07166 DUF1398 [H]

EC number: NA

Molecular weight: Translated: 16401; Mature: 16401

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATDNVHIVLKNDNTVLLKGLK
CCCEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCEEEHHHHH
NIVSVKFSKDRHLIETTSNKLKSSEITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS
HHHEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
LLFTENIQSTSQIFPH
EEEECCCCCHHHCCCC
>Mature Secondary Structure
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATDNVHIVLKNDNTVLLKGLK
CCCEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCEEEHHHHH
NIVSVKFSKDRHLIETTSNKLKSSEITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS
HHHEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
LLFTENIQSTSQIFPH
EEEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]