| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
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The map label for this gene is stfQ [H]
Identifier: 218695092
GI number: 218695092
Start: 1758317
End: 1761280
Strand: Reverse
Name: stfQ [H]
Synonym: EC55989_1691
Alternate gene names: 218695092
Gene position: 1761280-1758317 (Counterclockwise)
Preceding gene: 218695093
Following gene: 218695091
Centisome position: 34.17
GC content: 54.82
Gene sequence:
>2964_bases ATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAA ACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTG AGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATCACCGTGTATGAAGAT TCCCGACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGA ACTGATGGTGGAAGAGGTGGCTCGTAACGCGTCCGCAGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATG CCAGCACATCTGCCCGTGAGGCGGCAACCCATGCGACTGATGCTGCAGGCTCAGCACGCGCAGCCAGCACGTCAGCCGGA CAGGCCGCGTCGTCGGCTCAGTCAGCGTCTTCCAGCGCAGGAACGGCATCAGCAAAAGCCTCTGAGGCATCAAAAAGTGC TGCCGCTGCAGAGTTCTCAAAAAGCGTGGCGGCCACCAGTGCCGCTGCGGCGAAAACGTCAGAAACGAATGCGGCAGCGT CACAACAATCAGCAGCCACTTCTGCATCCACCGCGACCACGAAAGCGTCAGAAGCTGCCACCTCAGCCCGGGATGCGTCG GCTTCAAAAGAGGCGGCAAAATCATCAGAAACGAGCGCAGCCTCGAGCGCCAGCAGCGCAGCTTCCTCGGCAACGGCGAC AGCAAATTCTGCGAAGGCGGCAAAAACGTCCGAGACGAACGCCAGGTCTTCTGAAACGGCAGCGGGACAGAGTGCCTCAG CTGCGGCAGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCT AGCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCCGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACA GGCCAGCGCAGCAGCGAGGTCTGCTTCCGCAGCGAAGACATCCGAGACGAACGCGAAAGCGTCGGAAACCAGCGCAGAAT CCTCAAAAACGGCTGCCGCATCGTCCGCCAGTTCGGCGGCGTCATCGGCATCATCTGCGTCTGCTTCAAAAGATGAGGCG ACCAGACAAGCATCAGCAGCGAAGGGCAGTGCCACGACGGCATCCACGAAGGCGACAGAGGCAGCTGGCAGTGCGACGGC GGCAGCTCAGAGCAAGAGTACGGCGGAATCCGCGGCAACGCGCGCCGAGACAGCAGCAAAACGGGCAGAGGATATTGCAT CCGCCGTGGCGCTTGAGGATGCGAGCACGACGAAAAAGGGGATAGTACAGCTCAGCAGCGCGACTAACAGCACTTCCGAG TCACTGGCGGCAACGCCAAAAGCCGTTAAGGCCGCGTATGAGCTGGCTAACGGGAAATACACCGCACAGGATGCAACGAC AGCACAGAAAGGGATAGTTCAGCTTAGCAACGCGACCAACAGCACATCTGAAATGCTGGCGGCAACGCCAAAGTCGGTAA AGGCAGCCTATGACCTTGCTAACGGGAAATATACTGCTCAGGACGCTACGACAGCACAAAAAGGAATTGTCCAGCTCAGT AGTGCAACCAACAGCGCATCTGAAACGCTTGCCGCGACACCGAAAGCAGTGAAAGCAGCTAATGATAATGCGAATGGTCG GGTACCTTCTGCCCGTAAGGTGAATGGTAAGGCGCTTTCAGCGGATATAACACTGACACCGAAAGATATTGGTACGCTTA ACTCAACAACTATGTCATTCAGCGGTGGTGCTGGTTGGTTCAAATTAGCAACGGTAACCATGCCACAGGCGAGTTCTGTT GTTTCAATTACGTTGATTGGTGGCGCGGGATTTAACGTGGGGTCACCTCAACAGGCAGGTATATCTGAACTTGTTTTGCG TGCAGGTAATGGTAATCCGAAGGGGATTACTGGTGCTTTATGGCAGCGCACATCGACAGGGTTTACAAATTTTGCCTGGG TCAATACATCTGGTGATACTTACGATATTTACGTTGCAATCGGAAATTATGCGACTGGTGTAAATATTCAATGGGATTAT ACCAGTAATGCCAGCGTGACGATTCATACGTCACCAGCATATTCTGCTAATAAGCCGGAAGGGTTAACGGACGGTACAGT TTATTCACTCTATACGCCATCAGAGCAGTTTTATCCGCCTGGCGCACCAATCCCGTGGCCATCAGATACCGTTCCGTCTG GCTATGCCCTGATGCAGGGGCAGACTTTTGACAAATCTGCATACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATC CCTGATATGCGTGGCTGGACGATTAAGGGCAAACCCGCCAGTGGTCGTGCCGTATTGTCTCAGGAACAGGACGGCATTAA ATCGCACACCCACAGCGCCAGCGCATCCAGTACGGATTTGGGGACGAAAAACACATCGTCGTTTGATTACGGAACCAAAT CCACGAATAACACCGGGGCGCATACCCATAGTATTAGCGGGACTGCAAATAGTGCCGGTGCGCACCAACACAAGAGTTCC GGTGCATTTGGTGGCACGAACACGAGCATTTTCCCTAATGGTTATACCGCGATTTCAAATCTAAGCGCGGGGATTATGAG CACAACAAGCGGTACTGGCCAGACTCGTAATGCAGGGAAGACATCATCAGATGGTGCTCATACCCACTCGCTGTCCGGCA CTGCTGCAAGCGCAGGCGCACATGCACATACTGTCGGTATTGGTGCTCATACGCACTCCGTTGCGATTGGTTCACATGGA CACACCATCACCATTAACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCATTTAACTATATTGTGAGGCTTGC ATAA
Upstream 100 bases:
>100_bases GACGGTTTCATCGTGGGTGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCG GGCTTTTTTGTGGGGGGAAT
Downstream 100 bases:
>100_bases TGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAA GGTGACGCATATATTCCGCC
Product: putative tail fiber protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 987; Mature: 986
Protein sequence:
>987_residues MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYED SRPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHATDAAGSARAASTSAG QAASSAQSASSSAGTASAKASEASKSAAAAEFSKSVAATSAAAAKTSETNAAASQQSAATSASTATTKASEAATSARDAS ASKEAAKSSETSAASSASSAASSATATANSAKAAKTSETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASA SAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASSASASKDEA TRQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSE SLAATPKAVKAAYELANGKYTAQDATTAQKGIVQLSNATNSTSEMLAATPKSVKAAYDLANGKYTAQDATTAQKGIVQLS SATNSASETLAATPKAVKAANDNANGRVPSARKVNGKALSADITLTPKDIGTLNSTTMSFSGGAGWFKLATVTMPQASSV VSITLIGGAGFNVGSPQQAGISELVLRAGNGNPKGITGALWQRTSTGFTNFAWVNTSGDTYDIYVAIGNYATGVNIQWDY TSNASVTIHTSPAYSANKPEGLTDGTVYSLYTPSEQFYPPGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAAAYPSGVI PDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKNTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSS GAFGGTNTSIFPNGYTAISNLSAGIMSTTSGTGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHG HTITINAAGNAENTVKNIAFNYIVRLA
Sequences:
>Translated_987_residues MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYED SRPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHATDAAGSARAASTSAG QAASSAQSASSSAGTASAKASEASKSAAAAEFSKSVAATSAAAAKTSETNAAASQQSAATSASTATTKASEAATSARDAS ASKEAAKSSETSAASSASSAASSATATANSAKAAKTSETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASA SAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASSASASKDEA TRQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSE SLAATPKAVKAAYELANGKYTAQDATTAQKGIVQLSNATNSTSEMLAATPKSVKAAYDLANGKYTAQDATTAQKGIVQLS SATNSASETLAATPKAVKAANDNANGRVPSARKVNGKALSADITLTPKDIGTLNSTTMSFSGGAGWFKLATVTMPQASSV VSITLIGGAGFNVGSPQQAGISELVLRAGNGNPKGITGALWQRTSTGFTNFAWVNTSGDTYDIYVAIGNYATGVNIQWDY TSNASVTIHTSPAYSANKPEGLTDGTVYSLYTPSEQFYPPGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAAAYPSGVI PDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKNTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSS GAFGGTNTSIFPNGYTAISNLSAGIMSTTSGTGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHG HTITINAAGNAENTVKNIAFNYIVRLA >Mature_986_residues AVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDS RPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHATDAAGSARAASTSAGQ AASSAQSASSSAGTASAKASEASKSAAAAEFSKSVAATSAAAAKTSETNAAASQQSAATSASTATTKASEAATSARDASA SKEAAKSSETSAASSASSAASSATATANSAKAAKTSETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASAS AAGKSAESAASSASTATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASSASASKDEAT RQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSES LAATPKAVKAAYELANGKYTAQDATTAQKGIVQLSNATNSTSEMLAATPKSVKAAYDLANGKYTAQDATTAQKGIVQLSS ATNSASETLAATPKAVKAANDNANGRVPSARKVNGKALSADITLTPKDIGTLNSTTMSFSGGAGWFKLATVTMPQASSVV SITLIGGAGFNVGSPQQAGISELVLRAGNGNPKGITGALWQRTSTGFTNFAWVNTSGDTYDIYVAIGNYATGVNIQWDYT SNASVTIHTSPAYSANKPEGLTDGTVYSLYTPSEQFYPPGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAAAYPSGVIP DMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKNTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSG AFGGTNTSIFPNGYTAISNLSAGIMSTTSGTGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGH TITINAAGNAENTVKNIAFNYIVRLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tail fiber family [H]
Homologues:
Organism=Escherichia coli, GI1787829, Length=241, Percent_Identity=95.0207468879668, Blast_Score=453, Evalue=1e-128, Organism=Escherichia coli, GI87081892, Length=494, Percent_Identity=95.9514170040486, Blast_Score=448, Evalue=1e-127,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011083 - InterPro: IPR005003 [H]
Pfam domain/function: PF07484 Collar; PF03335 Phage_fiber [H]
EC number: NA
Molecular weight: Translated: 97751; Mature: 97620
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSV CEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEE ILLVEGFPPSHAGTITVYEDSRPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAV EEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AQNTAAAKKSASDASTSAREAATHATDAAGSARAASTSAGQAASSAQSASSSAGTASAKA HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHH SEASKSAAAAEFSKSVAATSAAAAKTSETNAAASQQSAATSASTATTKASEAATSARDAS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC ASKEAAKSSETSAASSASSAASSATATANSAKAAKTSETNARSSETAAGQSASAAAGSKT HHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH AAASSASAASTSAGQASASASAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKT HCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC SETNAKASETSAESSKTAAASSASSAASSASSASASKDEATRQASAAKGSATTASTKATE CCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHH AAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSE HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHH SLAATPKAVKAAYELANGKYTAQDATTAQKGIVQLSNATNSTSEMLAATPKSVKAAYDLA HHHCCHHHHHHHHHHCCCEEECCCHHHHHHCEEEECCCCCCHHHHHHCCCHHHHHHHHCC NGKYTAQDATTAQKGIVQLSSATNSASETLAATPKAVKAANDNANGRVPSARKVNGKALS CCEEECCCHHHHHHHHEEEECCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEE ADITLTPKDIGTLNSTTMSFSGGAGWFKLATVTMPQASSVVSITLIGGAGFNVGSPQQAG EEEEECCHHCCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC ISELVLRAGNGNPKGITGALWQRTSTGFTNFAWVNTSGDTYDIYVAIGNYATGVNIQWDY HHHHHEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCEEECCEEEEEE TSNASVTIHTSPAYSANKPEGLTDGTVYSLYTPSEQFYPPGAPIPWPSDTVPSGYALMQG CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEECC QTFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDL CCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCEEECCCCCCHHHHCCCCCCCCCCC GTKNTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYTAISN CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHH LSAGIMSTTSGTGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHG CCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCC HTITINAAGNAENTVKNIAFNYIVRLA CEEEEEECCCCHHHHHHHHHHEEEECC >Mature Secondary Structure AVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSV EEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEE ILLVEGFPPSHAGTITVYEDSRPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAV EEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AQNTAAAKKSASDASTSAREAATHATDAAGSARAASTSAGQAASSAQSASSSAGTASAKA HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHH SEASKSAAAAEFSKSVAATSAAAAKTSETNAAASQQSAATSASTATTKASEAATSARDAS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC ASKEAAKSSETSAASSASSAASSATATANSAKAAKTSETNARSSETAAGQSASAAAGSKT HHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH AAASSASAASTSAGQASASASAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKT HCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC SETNAKASETSAESSKTAAASSASSAASSASSASASKDEATRQASAAKGSATTASTKATE CCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHH AAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSE HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHH SLAATPKAVKAAYELANGKYTAQDATTAQKGIVQLSNATNSTSEMLAATPKSVKAAYDLA HHHCCHHHHHHHHHHCCCEEECCCHHHHHHCEEEECCCCCCHHHHHHCCCHHHHHHHHCC NGKYTAQDATTAQKGIVQLSSATNSASETLAATPKAVKAANDNANGRVPSARKVNGKALS CCEEECCCHHHHHHHHEEEECCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEE ADITLTPKDIGTLNSTTMSFSGGAGWFKLATVTMPQASSVVSITLIGGAGFNVGSPQQAG EEEEECCHHCCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC ISELVLRAGNGNPKGITGALWQRTSTGFTNFAWVNTSGDTYDIYVAIGNYATGVNIQWDY HHHHHEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCEEECCEEEEEE TSNASVTIHTSPAYSANKPEGLTDGTVYSLYTPSEQFYPPGAPIPWPSDTVPSGYALMQG CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEECC QTFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDL CCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCEEECCCCCCHHHHCCCCCCCCCCC GTKNTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYTAISN CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHH LSAGIMSTTSGTGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHG CCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCC HTITINAAGNAENTVKNIAFNYIVRLA CEEEEEECCCCHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]