Click here to switch to the map view.

The map label for this gene is fimD [H]

Identifier: 218695042

GI number: 218695042

Start: 1701223

End: 1703874

Strand: Reverse

Name: fimD [H]

Synonym: EC55989_1637

Alternate gene names: 218695042

Gene position: 1703874-1701223 (Counterclockwise)

Preceding gene: 218695043

Following gene: 218695041

Centisome position: 33.05

GC content: 44.12

Gene sequence:

>2652_bases
ATGACAGCCATTCGTGCCGCATTTAAGGCATATCGTATGCATCAGGTGTTAATAATGCCTCGCTTTGCACGGCTTACCAT
TGCCCTTGGCTTAGCAACTGCGGTATTTCCCGTTGACGCAGAGTATTATTTTAATCCACGGTTTTTAAGCAATGATCTTG
CTGAATCTGTCGATTTATCCGCCTTTACTAAGGGACGCGAGGCACCACCTGGTACATATCGGGTCGACATTTATTTGAAC
GATGAATTTATGACTAGTCGGGATATTACTTTTATTGCAGATGATAATAATGCAGAACTCATCCCATGCCTGAGTACAGA
TCTTCTTGTCAGTCTTGGTATAAAAAAATCAGAGTTATTAGACAATAAAGAACATTCGGCAGAAAAACATGTGCCGGACA
ACAGCGCATGCACACCACTTCAGGATCGTTTGGCCGACGCATCAACTGAGTTTGATGTTGGTCAGCAACATTTGTCACTC
TCCGTTCCGCAAATTTATGTTGGCAGAATGGCTCGCGGCTATGTTTCTCCTGAACTGTGGGAAGAAGGAATAAATGCTGG
GCTTCTAAATTATAGTTTTAATGGTAATTCCATTAATAATCGTAGTAACCATAATGCAGGAAAATCCAACTATGCATATT
TGAATTTACAGAGTGGCATCAACATTGGTAGTTGGCGACTGCGCGATAACTCAACGTGGAGTTATAACAGTGGGAGTAGC
AATTCATCTAACAGCAATAAATGGCAGCATATCAATACGTCGGCTGAACGTGACATTATTCCCTTACGCTCACGGTTAAC
GGTAGGTGATAGTTATACCGATGGCGATATTTTTGATAGTGTGAACTTTCGTGGCCTCAAAATAAATTCAACAGAAGCGA
TGTTGCCCGATAGCCAACATGGTTTCGCTCCGGTGATTCATGGTATTGCCCGTGGCACCGCACAAGTGAGTGTAAAACAG
AACGGATACGATGTTTATCAGACTACTGTTCCACCCGGCCCTTTTACTATTGATGATATCAACTCTGCCGCCAATGGTGG
TGATCTGCAAGTAACCATAAAAGAGGCAGACGGCAGTATTCAGACATTATATGTTCCTTATTCGTCTGTTCCGGTTCTCC
AACGTGCTGGATATACGCGTTATGCGCTTGCCATGGGGGAATATCGTAGTGGAAATAACCTGCAAAGCTCCCCCAAGTTC
ATACAAGGTAGCTTGATGCATGGACTGGAAGGAAACTGGACACCTTATGGCGGAATGCAAATTGCAGAAGATTATCAGGC
CTTCAACCTTGGTATTGGTAAAGATTTAGGACTTTTTGGTGCCTTTTCTTTCGATATCACGCAGGCCAATACGACACTTG
CAGATGGCACCCGTCACAGCGGGCAATCGGTTAAATCCGTCTACAGCAAATCCTTCTACCAGACAGGAACCAATATCCAG
GTCGCAGGATATCGCTATTCTACGCAAGGTTTTTATAACTTATCCGACAGTGCCTACAGTCGAATGAGTGGTTACACCGT
CAAGCCTCCTACCGGAGACACCAATGAGCAGACACAATTTATTGATTATTTTAATCTGTTCTACAGTAAGCGTGGTCAGG
AACAAATAAGCATCTCTCAGCAGCTTGGAAATTACGGTACGACATTTTTCAGTGCCAGTCGCCAAAGTTACTGGAACACG
TCACGCAGCGACCAGCAAATATCATTTGGATTAAATGTGCCGTTTGGTGATATTACGACTTCGCTGAATTACAGCTATTC
CAATAATATATGGCAAAACGATCGGGATCATTTACTCGCTTTTACGCTTAATGTTCCCTTCAGTCATTGGATGCGTACAG
ACAGTCAGTCGGCATTTCGTAATTCAAACGCCAGTTACAGTATGTCAAACGATTTGAAAGGCGGCATGACCAATCTATCG
GGGGTTTATGGCACTCTGCTGCCGGATAATAACCTGAATTATAGCGTTCAGGTCGGTAACACCCACGGAGGTAATACATC
GTCTGGCACCAGTGGTTACAGTTCTCTTAATTATCGTGGAGCTTACGGTAATACGAATGTCGGTTACAGTCGGAATGGTG
ACAGCAGCCAGATTTATTACGGAATGAGTGGTGGGATTATTGCTCATGCTGATGGCATCACCTTTGGACAGCCGCTGGGC
GACACAATGGTTCTGGTTAAGGCTCCTGGCGCTGATAATGTCAAAATAGAGAACCAGACCGGAATTCATACCGACTGGCG
TGGCTATGCCATATTACCATTTGCGACAGAATATAGAGAAAACCGTGTTGCTCTTAACGCGAATTCCCTTGCAGATAATG
TTGAACTGGATGAAACCGTGGTCACTGTCATCCCAACTCACGGTGCTATTGCCAGAGCAACATTTAATGCACAAATCGGC
GGGAAAGTATTAATGACGTTGAAGTACGGTAATAAGAGCGTTCCATTCGGTGCAATTGTCACACACGGAGAGAATAAAAA
TGGCAGAATTGTCGCAGAAAACGGTCAGGTTTATCTGACTGGACTTCCACAGTCAGGGAAATTACAGGTTTCATGGGGCA
AAGATAAAAACTCAAACTGTATTGTCGAGTACAAGCTTCCTGAAGTTTCTCCTGGTACCTTACTGAACCAGCAGACAGCA
ATCTGTCGCTAA

Upstream 100 bases:

>100_bases
TTCAGACGATCAATGATTACGGTGCATTAACTCCGCGTATTAAGGCAACCATGCAGTAAGCCAGTGACCTAATTAATAAT
AAACTCAATCGGAATTAATA

Downstream 100 bases:

>100_bases
GGAACAATAGATTATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCG
CAGATAGCGTTATTAAAATT

Product: putative fimbrial outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 883; Mature: 882

Protein sequence:

>883_residues
MTAIRAAFKAYRMHQVLIMPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLN
DEFMTSRDITFIADDNNAELIPCLSTDLLVSLGIKKSELLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSL
SVPQIYVGRMARGYVSPELWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
NSSNSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQ
NGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKF
IQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQ
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNT
SRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLS
GVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRNGDSSQIYYGMSGGIIAHADGITFGQPLG
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIG
GKVLMTLKYGNKSVPFGAIVTHGENKNGRIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTA
ICR

Sequences:

>Translated_883_residues
MTAIRAAFKAYRMHQVLIMPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLN
DEFMTSRDITFIADDNNAELIPCLSTDLLVSLGIKKSELLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSL
SVPQIYVGRMARGYVSPELWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
NSSNSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQ
NGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKF
IQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQ
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNT
SRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLS
GVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRNGDSSQIYYGMSGGIIAHADGITFGQPLG
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIG
GKVLMTLKYGNKSVPFGAIVTHGENKNGRIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTA
ICR
>Mature_882_residues
TAIRAAFKAYRMHQVLIMPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLND
EFMTSRDITFIADDNNAELIPCLSTDLLVSLGIKKSELLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLS
VPQIYVGRMARGYVSPELWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSN
SSNSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQN
GYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFI
QGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQV
AGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSG
VYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRNGDSSQIYYGMSGGIIAHADGITFGQPLGD
TMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGG
KVLMTLKYGNKSVPFGAIVTHGENKNGRIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAI
CR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=862, Percent_Identity=57.7726218097448, Blast_Score=1064, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=887, Percent_Identity=43.4047350620068, Blast_Score=726, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=42.2352941176471, Blast_Score=685, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=851, Percent_Identity=37.3678025851939, Blast_Score=503, Evalue=1e-143,
Organism=Escherichia coli, GI1786332, Length=866, Percent_Identity=32.3325635103926, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1788427, Length=854, Percent_Identity=28.9227166276347, Blast_Score=330, Evalue=3e-91,
Organism=Escherichia coli, GI87081778, Length=866, Percent_Identity=25.8660508083141, Blast_Score=243, Evalue=4e-65,
Organism=Escherichia coli, GI1789610, Length=705, Percent_Identity=24.3971631205674, Blast_Score=128, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96815; Mature: 96684

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIRAAFKAYRMHQVLIMPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLS
CCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHEEEECCCEEEECCCHHCCHHHHHCCCH
AFTKGREAPPGTYRVDIYLNDEFMTSRDITFIADDNNAELIPCLSTDLLVSLGIKKSELL
HHHCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCEEEEECCCCHHEECCCCHHHHH
DNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLSVPQIYVGRMARGYVSPELW
CCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHEEECCCHHHHHHHHHCCCCHHHH
EEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCC
NSSNSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQH
CCCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
GFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSI
CHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCE
QTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFIQGSLMHGLEGNWTPYGGMQ
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCE
IAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQ
ECCCCEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEE
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQ
EEEEEEECCCEEECCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
QLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLA
HHCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEE
FTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGN
EEEECCHHHHHCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
THGGNTSSGTSGYSSLNYRGAYGNTNVGYSRNGDSSQIYYGMSGGIIAHADGITFGQPLG
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETV
CEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEHHCCCCCEEEEECCCCCCCCCCCCEE
VTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGRIVAENGQVYLT
EEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCEEEEECCEEEEE
GLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR
ECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEECCCHHCCC
>Mature Secondary Structure 
TAIRAAFKAYRMHQVLIMPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLS
CHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHEEEECCCEEEECCCHHCCHHHHHCCCH
AFTKGREAPPGTYRVDIYLNDEFMTSRDITFIADDNNAELIPCLSTDLLVSLGIKKSELL
HHHCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCEEEEECCCCHHEECCCCHHHHH
DNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLSVPQIYVGRMARGYVSPELW
CCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHEEECCCHHHHHHHHHCCCCHHHH
EEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCC
NSSNSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQH
CCCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
GFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSI
CHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCE
QTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFIQGSLMHGLEGNWTPYGGMQ
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCE
IAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQ
ECCCCEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEE
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQ
EEEEEEECCCEEECCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
QLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLA
HHCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEE
FTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGN
EEEECCHHHHHCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
THGGNTSSGTSGYSSLNYRGAYGNTNVGYSRNGDSSQIYYGMSGGIIAHADGITFGQPLG
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETV
CEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEHHCCCCCEEEEECCCCCCCCCCCCEE
VTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGRIVAENGQVYLT
EEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCEEEEECCEEEEE
GLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR
ECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]