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The map label for this gene is ydeR

Identifier: 218695040

GI number: 218695040

Start: 1700163

End: 1700666

Strand: Reverse

Name: ydeR

Synonym: EC55989_1635

Alternate gene names: 218695040

Gene position: 1700666-1700163 (Counterclockwise)

Preceding gene: 218695041

Following gene: 218695039

Centisome position: 32.99

GC content: 44.64

Gene sequence:

>504_bases
ATGAAAAGACTTCACAAGAGGTTCCTGTTAGCTACGTTTTGCGCGTTATTCACAGCAACTCTCCAGGCCGTCGATGTCAC
TATCACTGTTAATGGTCGGGTAGTCGCTAAACCCTGCACTATTCAAACCAAAGAAGCTAACGTTAATCTCGGGGATCTTT
ATACGCGCAATCTGCAACAACCTGGTTCTGCATCTGGCTGGCACAATATTACTTTGTCATTAACCGATTGTCCGGTTGAA
ACAAGTGCAGTGACGGCAATCGTGACAGGTTCAACTGACAATACGGGTTATTACAAAAATGAAGGTACTGCCGAAAATAT
TCAGATAGAGCTGAGGGATGACCAGGATGCGACGTTAAAAAATGGCGATAGCAAAACGGTTATTGTTGATGAGATCACTC
GTAATGCACAGTTTCCACTTAAGGCAAGAGCTATCACGGTGAATGGAAACGCAAGCCAGGGAACGATCGAGGCGCTAATC
AATGTGATCTACACCTGGCAATAA

Upstream 100 bases:

>100_bases
TTACTCCGCTCGTCTGAAGTCAACTCAGAAGTCCGTCAATCCGGGACTGGTGAGGGCTTCGGCAACCTTTACCCTTGAAT
TTCAATAATCAGAGTCAGAT

Downstream 100 bases:

>100_bases
CGTCGATTCGATTTTCTTAGCCTTCTTTTTAAATCAATTTTTAACCTTAGGATATATCATGGGTAAAACAATCAGTATAA
AGGTCCTGTTCGGTATTTAT

Product: putative fimbrial-like adhesin exported protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKRLHKRFLLATFCALFTATLQAVDVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ

Sequences:

>Translated_167_residues
MKRLHKRFLLATFCALFTATLQAVDVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ
>Mature_167_residues
MKRLHKRFLLATFCALFTATLQAVDVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787780, Length=167, Percent_Identity=98.8023952095808, Blast_Score=340, Evalue=3e-95,
Organism=Escherichia coli, GI1790774, Length=166, Percent_Identity=57.2289156626506, Blast_Score=192, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18203; Mature: 18203

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLHKRFLLATFCALFTATLQAVDVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ
CCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEECCCEEEECCCCCCHHHHEECCCCC
PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLK
CCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCEEC
NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
CCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEECC
>Mature Secondary Structure
MKRLHKRFLLATFCALFTATLQAVDVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ
CCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEECCCEEEECCCCCCHHHHEECCCCC
PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLK
CCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCEEC
NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
CCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]