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The map label for this gene is yncD

Identifier: 218694993

GI number: 218694993

Start: 1630795

End: 1632897

Strand: Reverse

Name: yncD

Synonym: EC55989_1584

Alternate gene names: 218694993

Gene position: 1632897-1630795 (Counterclockwise)

Preceding gene: 218694995

Following gene: 218694990

Centisome position: 31.68

GC content: 51.02

Gene sequence:

>2103_bases
ATGAAGATTTTTTCCGTCCGACAGACCGTTTTGCCCGCACTGCTTGTCCTTTCCCCCGTTGTTTTTGCCGCTGATGAACA
GACTATGATTGTCAGTGCCGCACCGCAGGTGGTTTCAGAACTGGATACCCCAGCAGCAGTAAGCGTGGTGGATGGCGAGG
AGATGCGCCTGGCAACACCGCGCATTAACTTGTCCGAATCACTGACCGGCGTGCCTGGTTTGCAGGTACAAAACCGGCAG
AACTATGCGCAAGATTTACAGCTGTCGATTCGCGGATTTGGCTCCCGCTCCACTTACGGTATTCGCGGTATTCGCCTGTA
TGTGGACGGTATTCCCGCCACCATGCCCGACGGGCAAGGGCAAACATCCAACATCGATTTAAGCAGTGTGCAAAATGTGG
AAGTGCTGCGTGGCCCCTTCTCTGCCCTGTATGGCAACGCGTCTGGTGGGGTAATGAATGTCACCACCCAGACCGGACAA
CAGCCACCAACCATTGAAGCCAGTAGTTACTACGGCAGTTTTGGCAGCTGGCGCTATGGGCTGAAAGCAACGGGCGCAAC
GGGAGACGGCACACAGCCTGGCGATGTCGATTACACCGTCTCAACCACGCGTTTTACGACCCACGGCTATCGTGACCATA
GTGGCGCACAGAAAAATTTAGCTAATGCCAAACTGGGCGTACGCATTGATGAAGCCAGCAAATTAAGTCTGATTTTCAAT
AGTGTGGATATCAAAGCAGATGACCCAGGTGGGCTAACCAAAGCAGAATGGAAGGCTAATCCACAACAAGCGCCTCGTGC
AGAACAGTACGACACGCGAAAAACCATCAAGCAAACTCAGGCTGGGTTGCGCTATGAGCGTAGCCTGAGCGCGCAAGATG
ATATGAGTGTGATGATGTATGCCGGAGAGCGAGAAACGACCCAGTATCAGTCAATACCCATGGCACCACAACTTAACCCG
TCACATGCGGGCGGCGTGATTACCCTGCAACGCCATTACCAGGGGATAGACAGCCGCTGGACACACCGTGGTGAACTGGG
CGTTCCGGTCACGTTCACTACCGGCCTGAACTACGAAAACATGAGTGAAAACCGCAAGGGCTACAATAACTTCCGCCTGA
ATAGCGGCATGCCGGAGTACGGGCAAAAAGGTGAGTTGCGTCGCGACGAACGCAATCTGATGTGGAACATCGATCCCTAT
TTACAGACGCAGTGGCAGCTGAGCGAAAAACTGTCGCTGGATGCTGGCGTGCGCTACAGCTCCGTGTGGTTTGATTCCAA
TGATCATTACGTTACTCCGGGTAACGGCGATGACAGCGGTGATGCCAGTTATCATAAATGGCTACCTGCCGGTTCGTTAA
AATATGCAATGACCGATGCCTGGAATATCTATCTGGCAGCCGGGCGAGGTTTTGAAACGCCGACGATTAATGAGCTGTCT
TATCGCGCTGATGGGCAAAGCGGTATGAACTTTGGTTTAAAACCATCCACCAACGATACAATTGAGATCGGCAGTAAAAC
GCGTATTGGTGATGGGCTGCTTAGTCTCGCATTGTTTCAGACCGACACTGATGATGAAATTGTTGTCGATAGCAGTAGTG
GTGGGCGTACGACTTACAAAAATGCCGGAAAGACCCGTCGTCAAGGCGCTGAACTGGCATGGGATCAACGTTTCGCGGGA
GATTTTCGCGTAAAAGCGTCCTGGACCTGGCTTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGG
TAACCGGATGCCAGGGATCGCCCGTAATATGGGCTTTGCGTCGATAGGTTATGTACCGGAAGATGGTTGGTATGCAGGCA
CGGAAGCGCGTTATATGGGCGATATTATGGCAGATGATGAAAATACGGCAAAAGCGCCGTCTTATACTCTCGTCGGCTTA
TTCACCGGGTATAAATACAATTACCACAATTTAACTGTGGATTTATTTGGTCGTGTCGATAATTTATTCGATAAAGAATA
CGTTGGTTCTGTCATTGTCAATGAGTCAAACGGGCGATATTACGAACCTTCGCCCGGACGAAATTATGGTGCCGGCATGA
ATATTGCGTGGAGATTTGAGTAA

Upstream 100 bases:

>100_bases
ATTTTCTCAATTAATTAACGTATCGTGCCGTTTCGTTTTCCATAAATTTACAATTTTATTACCATGACAGCGTTTTCCCA
TTCTTAACCTGGCTTTTTTC

Downstream 100 bases:

>100_bases
TTACCTTGATGCCCGGTATTTGCCGGGCATTTACTTTAACGATTGTATTGCTGGTATAAAATAGCAATATTTTGTTGCAT
AATTTCAGCAAGACAATGTC

Product: putative iron outer membrane receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVKASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPSPGRNYGAGMNIAWRFE

Sequences:

>Translated_700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVKASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPSPGRNYGAGMNIAWRFE
>Mature_700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVKASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPSPGRNYGAGMNIAWRFE

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=700, Percent_Identity=99.2857142857143, Blast_Score=1436, Evalue=0.0,
Organism=Escherichia coli, GI1790743, Length=644, Percent_Identity=24.5341614906832, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788478, Length=155, Percent_Identity=32.9032258064516, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787024, Length=256, Percent_Identity=28.515625, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77237; Mature: 77237

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCCHHCCCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAQDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRVKASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEEEEEEEEEECHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVD
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPSPGRNYGAGMNIAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCCHHCCCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAQDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRVKASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEEEEEEEEEECHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVD
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPSPGRNYGAGMNIAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]