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The map label for this gene is nohA [H]

Identifier: 218694803

GI number: 218694803

Start: 1432760

End: 1433308

Strand: Direct

Name: nohA [H]

Synonym: EC55989_1389

Alternate gene names: 218694803

Gene position: 1432760-1433308 (Clockwise)

Preceding gene: 218694802

Following gene: 218694804

Centisome position: 27.79

GC content: 48.82

Gene sequence:

>549_bases
ATGAACGTCAATAAGAAAAAACTGGCCGATATTTTTGGCGTTGATGTCAGGACCATCACCGCCTGGCAGAGTCAGGGGTT
ACCACTAGTTTCTGGTGGAGGAAAAGGGACTGAATCAGTTTTTGATACAACTGCTGCCATTCAGTGGTATGCGCAGAGGG
AAGCTGATATTGAAAACGAAAAACTCCGTAAAGAGATCGAGGATTTGAGGGCTGCCAGCGAATCAGACCTTCAGCCCGGC
ACCATTGATTACGAACGTTACCGACTGACGAAGGCACAGGCCGATGCACAGGAGCTGAAAAATGCTCGTGAGGAAGGCCT
TGTCCTCGAGACGGAGTTATTTACCTACATCTTTCAGCGAGTGGCACAGAATATATCAGGGATCCTTGTCCGTGTCCCTC
AGACACTGCAGCGTAAATACCCTGATATATCACCCGTACATCTTGATGCTGTGAAAACTGAAATCGCGAAAGCATCCGAT
GTGGCTTCTGAAGCCGGTGAGAATGTGCGCAGGTGGATTGATGATTTCAGACGAACTGAGGGCGGCTAA

Upstream 100 bases:

>100_bases
TGATTATCAATAGAATTTTAAAAATATAAAAGGATCTGACAAAGGCTATTTTTGTTAGAAAACGCCATTTTCAGATCCTT
TCTGGTTCCCGGGGGAGTGT

Downstream 100 bases:

>100_bases
TTCTGCAGGAGCGATAGCAACCGGCCTCCTTGCGCTAAAAATTCCTGTCCCTCTGACGACAGTTCAGTGGGCAGATCGAC
ATTATTACCTTCCGAAAGAG

Product: Terminase small subunit (gp1)

Products: NA

Alternate protein names: Gp1 [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNVNKKKLADIFGVDVRTITAWQSQGLPLVSGGGKGTESVFDTTAAIQWYAQREADIENEKLRKEIEDLRAASESDLQPG
TIDYERYRLTKAQADAQELKNAREEGLVLETELFTYIFQRVAQNISGILVRVPQTLQRKYPDISPVHLDAVKTEIAKASD
VASEAGENVRRWIDDFRRTEGG

Sequences:

>Translated_182_residues
MNVNKKKLADIFGVDVRTITAWQSQGLPLVSGGGKGTESVFDTTAAIQWYAQREADIENEKLRKEIEDLRAASESDLQPG
TIDYERYRLTKAQADAQELKNAREEGLVLETELFTYIFQRVAQNISGILVRVPQTLQRKYPDISPVHLDAVKTEIAKASD
VASEAGENVRRWIDDFRRTEGG
>Mature_182_residues
MNVNKKKLADIFGVDVRTITAWQSQGLPLVSGGGKGTESVFDTTAAIQWYAQREADIENEKLRKEIEDLRAASESDLQPG
TIDYERYRLTKAQADAQELKNAREEGLVLETELFTYIFQRVAQNISGILVRVPQTLQRKYPDISPVHLDAVKTEIAKASD
VASEAGENVRRWIDDFRRTEGG

Specific function: Involved in the initiation of the phage DNA packaging into the prohead. Processes replicating concatemeric DNA into pieces of unit length with cohesive ends [H]

COG id: COG4220

COG function: function code L; Phage DNA packaging protein, Nu1 subunit of terminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terminase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1786773, Length=181, Percent_Identity=51.3812154696133, Blast_Score=201, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR010906
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07471 Phage_Nu1 [H]

EC number: NA

Molecular weight: Translated: 20456; Mature: 20456

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNKKKLADIFGVDVRTITAWQSQGLPLVSGGGKGTESVFDTTAAIQWYAQREADIENE
CCCCHHHHHHHHCCCHHEEEHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHH
KLRKEIEDLRAASESDLQPGTIDYERYRLTKAQADAQELKNAREEGLVLETELFTYIFQR
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAQNISGILVRVPQTLQRKYPDISPVHLDAVKTEIAKASDVASEAGENVRRWIDDFRRTE
HHHHHHHEEHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GG
CC
>Mature Secondary Structure
MNVNKKKLADIFGVDVRTITAWQSQGLPLVSGGGKGTESVFDTTAAIQWYAQREADIENE
CCCCHHHHHHHHCCCHHEEEHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHH
KLRKEIEDLRAASESDLQPGTIDYERYRLTKAQADAQELKNAREEGLVLETELFTYIFQR
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAQNISGILVRVPQTLQRKYPDISPVHLDAVKTEIAKASDVASEAGENVRRWIDDFRRTE
HHHHHHHEEHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]