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The map label for this gene is ydfQ

Identifier: 218694798

GI number: 218694798

Start: 1429321

End: 1429854

Strand: Direct

Name: ydfQ

Synonym: EC55989_1384

Alternate gene names: 218694798

Gene position: 1429321-1429854 (Clockwise)

Preceding gene: 218694797

Following gene: 218694799

Centisome position: 27.73

GC content: 50.94

Gene sequence:

>534_bases
ATGAGCGCAAAAATCAAATACGGCCTGTCAGCTGCTGTTCTGGCGCTGATTGCTGCAGGCGCGTCTGCTCCTCAAATACT
TGACCAGTTTCTGGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGTATATGGACTATCTGTCGTG
GTGCCACAATGGTGGATGGTAAGCCCGTCATACCGGGAATGAAGCTGTCGAAGGAAAAATGCGACCAGGTTAACGCTATT
GAACGTGATAAGGCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAGAAAGCGGGTATAGCGTC
ATTATGTCCCTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGG
GCGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAG
GTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGATCAGTGA

Upstream 100 bases:

>100_bases
ACCATAAAAATTAACAGTTCTGATAACTCGATTACGGGTTGTTAGCTTTTTGCAGTTGGCTTTCCAGTATCTTTCATTGG
TAGCATCCTGATAAATATCC

Downstream 100 bases:

>100_bases
GCAGAGTCGCAGCGATTATTTATACTCTGGTTATCTGCACCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGCGAT
AACGCCATTACCTACAAAGC

Product: putative membrane-associated lysozyme; Qin prophage

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAI
ERDKALAWVERNIKVPLTEPQKAGIASLCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
VIRRDQESALACWGIDQ

Sequences:

>Translated_177_residues
MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAI
ERDKALAWVERNIKVPLTEPQKAGIASLCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
VIRRDQESALACWGIDQ
>Mature_176_residues
SAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIE
RDKALAWVERNIKVPLTEPQKAGIASLCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQV
IRRDQESALACWGIDQ

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1787836, Length=177, Percent_Identity=93.2203389830508, Blast_Score=345, Evalue=7e-97,
Organism=Escherichia coli, GI1786768, Length=147, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 19420; Mature: 19289

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRDGSGIWTICRGATMVDG
CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCEEECC
KPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASLCPYNIGPGKCFP
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
STFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCC
>Mature Secondary Structure 
SAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRDGSGIWTICRGATMVDG
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCEEECC
KPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASLCPYNIGPGKCFP
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
STFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]