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The map label for this gene is flgD

Identifier: 218694609

GI number: 218694609

Start: 1241994

End: 1242689

Strand: Direct

Name: flgD

Synonym: EC55989_1188

Alternate gene names: 218694609

Gene position: 1241994-1242689 (Clockwise)

Preceding gene: 218694608

Following gene: 218694610

Centisome position: 24.09

GC content: 54.31

Gene sequence:

>696_bases
ATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAA
CGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTGAAAAACCAGGACCCGACCAATCCAATGGAAA
ACAACGAGCTGACGTCGCAATTGGCACAAATCAGCACGGTCAGCGGGATTGAAAAACTCAATACCACGCTCGGATCTATT
TCCGGACAGATTGATAACAGCCAGTCGTTACAGGCCAGTAACCTGATCGGTCACGGCGTGATGATCCCCGGCACAACTGT
TCTTGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACA
AAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCTGGAGTTCAC
AGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAA
CGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTGTGATCCGCGGCAACAGCGGTAATACGC
TGGATCTCGGCACTTACGGCACCACCACCCTCGACGAAGTACGGCAGATAATTTAA

Upstream 100 bases:

>100_bases
TGTCGGCGTCACGCAGCTATCAGGCCAACGTTGAAGTGCTCAACACGGTGAAAAGTATGATGCTGAAAACCCTTACGCTC
GGTCAATAAAGGAGAAAGCT

Downstream 100 bases:

>100_bases
GCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACCAACCTCGATGT
TATTGGCAACAATATCGCCA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII

Sequences:

>Translated_231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
>Mature_230_residues
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSIS
GQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHS
FTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII

Specific function: Required for flagellar hook formation. May act as a scaffolding protein

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family

Homologues:

Organism=Escherichia coli, GI1787315, Length=231, Percent_Identity=100, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGD_ECOLI (P75936)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H64850
- RefSeq:   AP_001701.1
- RefSeq:   NP_415593.1
- ProteinModelPortal:   P75936
- SMR:   P75936
- DIP:   DIP-9632N
- IntAct:   P75936
- STRING:   P75936
- EnsemblBacteria:   EBESCT00000004189
- EnsemblBacteria:   EBESCT00000016456
- GeneID:   945813
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1062
- KEGG:   eco:b1075
- EchoBASE:   EB4016
- EcoGene:   EG14268
- eggNOG:   COG1843
- GeneTree:   EBGT00050000009302
- HOGENOM:   HBG691812
- OMA:   GQIDVSQ
- ProtClustDB:   PRK06655
- BioCyc:   EcoCyc:G360-MONOMER
- Genevestigator:   P75936
- InterPro:   IPR005648

Pfam domain/function: PF03963 FlgD

EC number: NA

Molecular weight: Translated: 23575; Mature: 23444

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCCCCCCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCCCCCCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503