Click here to switch to the map view.

The map label for this gene is yccF

Identifier: 218694436

GI number: 218694436

Start: 1086770

End: 1087216

Strand: Reverse

Name: yccF

Synonym: EC55989_1010

Alternate gene names: 218694436

Gene position: 1087216-1086770 (Counterclockwise)

Preceding gene: 218694438

Following gene: 218694435

Centisome position: 21.09

GC content: 48.1

Gene sequence:

>447_bases
ATGCGTACCGTTTTGAACATTCTGAACTTTGTGCTTGGCGGATTTGTCACCACTCTGGGCTGGCTGTTGGCGACTCTGGT
CAGTATTATGCTGATTTTTACCTTACCGCTGACACGATCCTGCTGGGAGATCACTAAACTGTCTCTGGTGCCTTATGGCA
ATGAAGCTATTCATGTCGATGAACTGAACCCGGCTGGCAAAAATGTGCTGCTGAATACTGGCGGTACGGTATTGAATATT
TTCTGGCTGATTTTCTTTGGCTGGTGGTTATGCCTGATGCACATTGCAACGGGCATCGCACAATGTATTTCAATCATTGG
CATTCCTGTCGGCATTGCGAACTTTAAAATTGCCGCTATTGCACTATGGCCGGTTGGTCGTCGCGTGGTATCGGTAGAAA
CGGCGCAAGCTGCGCGTGAAGCCAATGCACGTCGTCGTTTTGAATAA

Upstream 100 bases:

>100_bases
TTATTTCTTATCAGTGTAACCGTCAGAGAAAACGTGCTCCAGCCCAAAAAAACGTTACAATTGCCGCCCATTACTGAAAA
CCACAGTAAAGCGAGGTTTT

Downstream 100 bases:

>100_bases
TCCACTAATATGGCCTTTATGCTAAGTCCTTTGCTCAAACGCTATACCTGGAACAGCGCCTGGCTGTATTACGCGCGTAT
TTTTATTGCGCTTTGTGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRTVLNILNFVLGGFVTTLGWLLATLVSIMLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE

Sequences:

>Translated_148_residues
MRTVLNILNFVLGGFVTTLGWLLATLVSIMLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE
>Mature_148_residues
MRTVLNILNFVLGGFVTTLGWLLATLVSIMLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE

Specific function: Unknown

COG id: COG3304

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787195, Length=148, Percent_Identity=98.6486486486486, Blast_Score=291, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005185 [H]

Pfam domain/function: PF03733 DUF307 [H]

EC number: NA

Molecular weight: Translated: 16336; Mature: 16336

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVLNILNFVLGGFVTTLGWLLATLVSIMLIFTLPLTRSCWEITKLSLVPYGNEAIHVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEE
ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEE
ALWPVGRRVVSVETAQAAREANARRRFE
EECCCCCHHEEHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTVLNILNFVLGGFVTTLGWLLATLVSIMLIFTLPLTRSCWEITKLSLVPYGNEAIHVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEE
ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEE
ALWPVGRRVVSVETAQAAREANARRRFE
EECCCCCHHEEHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2542273; 7984428 [H]