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The map label for this gene is ybcQ

Identifier: 218694212

GI number: 218694212

Start: 836045

End: 836428

Strand: Direct

Name: ybcQ

Synonym: EC55989_0781

Alternate gene names: 218694212

Gene position: 836045-836428 (Clockwise)

Preceding gene: 218694211

Following gene: 218694214

Centisome position: 16.22

GC content: 42.97

Gene sequence:

>384_bases
ATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGAGCGTGGGCGGCTAATAATCATGAAGATGTGACCTGGTCGTCCAT
TGCCGCCGGTTTTAAGGGATTAATTACTTCAAAAGTAAAATCTCGCCCGCAATGTTGTGACGATGACGCGATGATCATTT
GCGGGTGCATGGCCCGTCTGAAAAAGAACAACAGCGATTTGCACGATTTATTAGTAGATTATTATGTAGTCGGTATGACA
TTCATGTCACTGGCAGGTAAGCATTGCTGCTCTGATGGTTATATCGGGAAAAGGTTACAGAAGGCTGAGGGCATAATTGA
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGATGGATATCGTTGTTAATAACTCTAATTAA

Upstream 100 bases:

>100_bases
GGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTTCGTTGATTTTTGCTTGTAATTGGCGTTCTGGTCT
GATTTTTGTGGAGTAAGTTG

Downstream 100 bases:

>100_bases
TACGCCAATTATTTACTAAAAGTTATTAAAAATGGGGCGTTGAAACACCCCCAAAAATAAAGGGTAATATATAACAGAAG
GTTTGTATAGTTAGAAGCAA

Product: putative antitermination protein Q homolog; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMT
FMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN

Sequences:

>Translated_127_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMT
FMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN
>Mature_127_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMT
FMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family

Homologues:

Organism=Escherichia coli, GI1786763, Length=127, Percent_Identity=100, Blast_Score=263, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REQ1_ECOLI (Q47274)

Other databases:

- EMBL:   X92587
- EMBL:   U82598
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   S66593
- RefSeq:   AP_001197.1
- RefSeq:   NP_415083.1
- STRING:   Q47274
- EnsemblBacteria:   EBESCT00000000734
- EnsemblBacteria:   EBESCT00000016983
- GeneID:   945177
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0539
- KEGG:   eco:b0551
- EchoBASE:   EB3397
- EcoGene:   EG13633
- eggNOG:   NOG79936
- GeneTree:   EBGT00050000010141
- HOGENOM:   HBG467771
- OMA:   ISRCIAS
- ProtClustDB:   CLSK879914
- BioCyc:   EcoCyc:G6307-MONOMER
- Genevestigator:   Q47274
- GO:   GO:0006350
- InterPro:   IPR010534

Pfam domain/function: PF06530 Phage_antitermQ

EC number: NA

Molecular weight: Translated: 14177; Mature: 14177

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
11.8 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
11.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
IVVNNSN
EEEECCC
>Mature Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
IVVNNSN
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503