Click here to switch to the map view.

The map label for this gene is ybgQ

Identifier: 218694141

GI number: 218694141

Start: 764082

End: 766583

Strand: Reverse

Name: ybgQ

Synonym: EC55989_0701

Alternate gene names: 218694141

Gene position: 766583-764082 (Counterclockwise)

Preceding gene: 218694142

Following gene: 218694140

Centisome position: 14.87

GC content: 49.48

Gene sequence:

>2502_bases
TTGGCGGCGCTATCGCCGCCTTTCATAAAATATTTATCAGGTATGGACACCGTGAATATTTATCGACTCTCTTTTGTATC
CTGCCTGGTCGTGGCGATGCCTTGCGCATTGGCGGTCGAATTCAACCTTAATGTTCTCGATAAATCAATGCGCGACCGCA
TTGATATTTCATTATTAAAGGAAAAAGGAGTCATTGCTCCCGGTGAGTATTTTGTTAGCGTTGCGGTAAATAATAACCAA
ATCAGTAACGGGCAAAAGATTAACTGGCACAAAAATGACGATAAAACCATTCCGTGCATCAATGATTTACTGGTCGATAA
ATTTGGCTTAAAACCTGAAGTCCGTCAGTCGTTACCATTGATAAATCAGTGCGTCGATTTTAGCTCCCGACCTGAAATGC
TCTTCAATTTCGATCAAGCCAATCAGCAACTAAATATCACCATTCCGCAAGCCTGGCTGGCGTGGCACTCAGAAAACTGG
ACCCCACCCTCCACATGGAAAGAAGGTGTCGCCGGTGTCCTGATGGATTACAACTTGTTTGCCAGCAGCTACCGCCCACA
GGATGGCAGCAGCAGCACTAATCTTAACGCCTATGGAACAGCCGGAATCAACACGGGGGCATGGCGCTTACGCAGTGATT
ATCAGTTGAATCAGACTGATAGCGATGATAACCATGAACAGTCAGGCGAAATATCACGTACCTATCTTTTTCGCCCGTTA
CCGCAATTAGGTTCAAAATTAACCCTCGGCGAAACGGATTTTAGTTCCAATATTTTCGACGGTTTTTCTTATACCGGCGC
GGCACTGGCAAGTGACGATCGAATGTTGCCATGGGAACTACGCGGCTACGCCCCACAAATTAGCGGTATTGCAAAGACCA
ATGCCACGGTGACGATCAGTCAATCAGGCCGCGTCATTTACCAGAAAAAAGTCCCACCAGGCCCATTTATCATTGACGAC
CTTAATCAGTCTGTTCAGGGCACACTGGATGTCAAAGTGACGGAAGAAGATGGTCGGGTGAACAATTTCCAGGTTTCGGC
AGCATCGACGCCCTTCCTGACTCGTCAGGGACAGGTTCGCTATAAACTGGCCGCGGGTCAGCCACGGCCCTCCATGTCAC
ATCAAACTGAAAATGAAACCTTTTTTAGCAATGAAGTTTCCTGGGGGATGCTGTCAAACACCTCGCTGTACGGCGGCCTG
CTGCTTTCTGGTGATGACTACCATTCTGCCGCAATAGGTATCGGGCAAAATATGCTGTGGCTTGGCGCGCTGTCGTTTGA
TGTCACGTGGGCCAGTAGTCACTTTGATACTCAGCAGGACGAGCGGGGCTTAAGCTACCGTTTTAATTACAGCAAACAAG
TGGATGCCACTAACAGCACGATTTCCCTCGCCGCTTATCGTTTCTCCGATCGTCATTTTCACAGCTACGCCAACTATCTG
GATCACAAATACAACGACAGCGATGCGCAGGACGAAAAACAGACGATCAGCTTATCTGTGGGCCAACCGATTACCCCACT
AAACCTCAATCTTTACGCCAACCTGCTACATCAAACCTGGTGGAATGCAGACGCCTCCACGACCGCCAACATCACGGCAG
GTTTTAATGTTGATATTGGTGACTGGAGAGATATCTCTATTTCGACGTCATTCAATACAACCCATTACGAAGATAAAGAT
CGCGACAACCAGATTTACCTGTCGATTTCGCTCCCCTTCGGTAACGGTGGTCGGGTTGGCTATGACATGCAAAACAGTAG
CCACAGCACCACACACCGCATGTCGTGGAACGATACGCTGGATGAACGTAATAGCTGGGGCATGTCTGCCGGACTGCAAT
CCGACCGTCCTGACAATGGAGCCCAGGTGAGCGGTAACTATCAGCACCTGAGTTCAGCGGGTGAGTGGGATATTTCTGGT
ACCTATGCCGCCAATGATTACAGTTCCGTCAGCAGCAGCTGGAGCGGTTCTTTCACCGCAACCCAATATGGTGCAGCGTT
TCATCGCCGCAGCTCCACCAATGAACCACGCCTGATGGTCAGCACCGATGGCGTGGCAGATATTCCGATTCAGGGCAATC
TCGACTACACCAACCATTTTGGCATTGCGGTGGTGCCGTTGATTTCCAGTTACCAGCCTTCCACCGTGGCGGTGAACATG
AATGACTTACCCGACGGCGTAACAGTTGCAGAAAACGTTATCAAAGAAACGTGGATTGAAGGCGCGATAGGTTACAAATC
ACTGGCTTCCCGTTCCGGTAAAGACGTTAACGTCATCATTCGCAACGCCAGCGGTCAGTTTCCTCCCCTCGGAGCGGATA
TCCGCCAGGATGACAGCGGCATTAGCGTGGGGATGGTTGGCGAGGAAGGACATGCCTGGTTAAGCGGAGTCGCTGAAAAT
CAAAAGTTTACCGTGGTCTGGGGTGATAGCCAGCATTGCTCGCTCCATCTTCCTGAACATATGGAAGACACCGCAAATCG
CCTGATTTTACCTTGTCATTAA

Upstream 100 bases:

>100_bases
TCTTTGCCTGGATGGAACAAATTGATCAGGCTACACCTGTAACGCCAGGCGCAGTTACGGCGAATGCAACCTACGTGCTG
GATTATAAATAAGTATTACT

Downstream 100 bases:

>100_bases
TTAAGGAAATGAAAATGACATTTATGAAAGGACTACCCCTTTTGTTGTTGGTTGCCAGTCTGTGCAGCCACGCTGCACTA
CAACCCGATCGCACTCGTAT

Product: conserved hypothetical protein; putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 832

Protein sequence:

>833_residues
MAALSPPFIKYLSGMDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQ
ISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNITIPQAWLAWHSENW
TPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAKTNATVTISQSGRVIYQKKVPPGPFIIDD
LNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGL
LLSGDDYHSAAIGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
DHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKD
RDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISG
TYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPIQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
NDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAEN
QKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH

Sequences:

>Translated_833_residues
MAALSPPFIKYLSGMDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQ
ISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNITIPQAWLAWHSENW
TPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAKTNATVTISQSGRVIYQKKVPPGPFIIDD
LNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGL
LLSGDDYHSAAIGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
DHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKD
RDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISG
TYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPIQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
NDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAEN
QKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH
>Mature_832_residues
AALSPPFIKYLSGMDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQI
SNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNITIPQAWLAWHSENWT
PPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPLP
QLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAKTNATVTISQSGRVIYQKKVPPGPFIIDDL
NQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLL
LSGDDYHSAAIGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLD
HKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDR
DNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGT
YAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPIQGNLDYTNHFGIAVVPLISSYQPSTVAVNMN
DLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQ
KFTVVWGDSQHCSLHLPEHMEDTANRLILPCH

Specific function: Could be involved in the export and assembly of the putative ybgD fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=95.343137254902, Blast_Score=1568, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=879, Percent_Identity=28.5551763367463, Blast_Score=288, Evalue=7e-79,
Organism=Escherichia coli, GI1789533, Length=789, Percent_Identity=29.7845373891001, Blast_Score=272, Evalue=7e-74,
Organism=Escherichia coli, GI1786744, Length=781, Percent_Identity=28.809218950064, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI1786332, Length=875, Percent_Identity=26.6285714285714, Blast_Score=250, Evalue=3e-67,
Organism=Escherichia coli, GI1787172, Length=872, Percent_Identity=26.0321100917431, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1788427, Length=805, Percent_Identity=25.8385093167702, Blast_Score=200, Evalue=4e-52,
Organism=Escherichia coli, GI1789610, Length=807, Percent_Identity=24.1635687732342, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92058; Mature: 91926

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALSPPFIKYLSGMDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLK
CCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEE
EKGVIAPGEYFVSVAVNNNQISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPL
CCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHCHH
INQCVDFSSRPEMLFNFDQANQQLNITIPQAWLAWHSENWTPPSTWKEGVAGVLMDYNLF
HHHHHCCCCCCCEEEEECCCCCEEEEEECHHEEEECCCCCCCCHHHHHCCCEEEEEHHHH
ASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
HCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCH
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAKTNATVTIS
HHHCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEE
QSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVR
CCCCEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCEE
YKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLLSGDDYHSAAIGIGQNMLW
EEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCEECEEEECCCCCCCEEEECCCCEEE
LGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
EEEEEEEEEECCCCCCCCHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIG
CCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC
DWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTL
CCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCC
DERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTA
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEE
TQYGAAFHRRSSTNEPRLMVSTDGVADIPIQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
HHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEEC
NDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSG
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
ISVGMVGEEGHAWLSGVAENQKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH
CEEEEECCCCCHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHCCEEEECC
>Mature Secondary Structure 
AALSPPFIKYLSGMDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLK
CCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEE
EKGVIAPGEYFVSVAVNNNQISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPL
CCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHCHH
INQCVDFSSRPEMLFNFDQANQQLNITIPQAWLAWHSENWTPPSTWKEGVAGVLMDYNLF
HHHHHCCCCCCCEEEEECCCCCEEEEEECHHEEEECCCCCCCCHHHHHCCCEEEEEHHHH
ASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
HCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCH
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAKTNATVTIS
HHHCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEE
QSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVR
CCCCEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCEE
YKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLLSGDDYHSAAIGIGQNMLW
EEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCEECEEEECCCCCCCEEEECCCCEEE
LGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
EEEEEEEEEECCCCCCCCHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIG
CCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC
DWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTL
CCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCC
DERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTA
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEE
TQYGAAFHRRSSTNEPRLMVSTDGVADIPIQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
HHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEEC
NDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSG
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
ISVGMVGEEGHAWLSGVAENQKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH
CEEEEECCCCCHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]