Click here to switch to the map view.

The map label for this gene is ybfO

Identifier: 218694128

GI number: 218694128

Start: 749952

End: 751385

Strand: Direct

Name: ybfO

Synonym: EC55989_0686

Alternate gene names: 218694128

Gene position: 749952-751385 (Clockwise)

Preceding gene: 218694127

Following gene: 218694129

Centisome position: 14.55

GC content: 54.46

Gene sequence:

>1434_bases
ATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTTACGGCAGGCTGACGGAGAAAAC
CGACCTCATCCCGGAAGGGGGTATCCGTACGGATGATGAGCGCACCCACCGGTACCATTACGACAGTCAGCACCGGCTGG
TGCACTACACGCGGACACAATATGCAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCA
AAACGGGTATGGCGACGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCTG
GGACGGCGACCGGCTGACCACGATACAGAACGACAGGAGCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCAC
TCATCAGGGTTGAAACCGCCACCGGTGAGCAGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGC
GGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGA
CCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGG
TGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGG
GCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTAT
CCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGA
GGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGCTGAATCCGGTTCAGTATATA
GATTCAATGGGACTGGCATCAAAATATGGACACTTAAATAATGGCGGATATGGAGCGAGACCCAACAAACCGCCTACGCC
CGATCCAAGTAAATTGCCGGACATAGCGAAACAATTAAGACTGCCATATCCTATTGACCAGGCCAGTAGTGCGCCTAATG
TTTTCAAAACATTCTTCAGAGCATTAAGCCCTTACGACTACACACTGTATTGCAGGAAGTGGGTAAAACCAAATCTGACT
TGTACGCCACAGGATGATTCCCAGTATCCAGGGATGGATATAAAGACAGCAAGTGATTACCTGCCACAGACAAATTGGCC
AACAACTCAATTACCACCAGGATATACTTGTGCAGAACCCTATTTATTCCCAGACATTAATAAACCCGATGGGCCAGCAA
CAGCAGGGATAGATGATTTGGGTGAAATTTTAGCTAAGATGAAACAGAGAACATCGAGAGGAATAAGAAAATGA

Upstream 100 bases:

>100_bases
TATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGC
ACCCGGACAGCACCCTCAGC

Downstream 100 bases:

>100_bases
AAAGAGTTTTGTTCTTTTTGCTGATGATATTTGTTAGTTTTGGTGTTATAGCTGATTGCGAAATACAAGCTAAAGATCAT
GATTGTTTTACTATTTTCGC

Product: conserved hypothetical protein; putative rhs-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVA
KRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGEQAKTQRRSLADTLQQSG
GEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEG
ATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYI
DSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLT
CTPQDDSQYPGMDIKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK

Sequences:

>Translated_477_residues
MWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVA
KRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGEQAKTQRRSLADTLQQSG
GEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEG
ATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYI
DSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLT
CTPQDDSQYPGMDIKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
>Mature_477_residues
MWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVA
KRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGEQAKTQRRSLADTLQQSG
GEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEG
ATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYI
DSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLT
CTPQDDSQYPGMDIKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK

Specific function: Unknown

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI48994942, Length=339, Percent_Identity=93.2153392330383, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1786917, Length=327, Percent_Identity=95.4128440366973, Blast_Score=647, Evalue=0.0,
Organism=Escherichia coli, GI1790020, Length=325, Percent_Identity=95.6923076923077, Blast_Score=647, Evalue=0.0,
Organism=Escherichia coli, GI1786706, Length=335, Percent_Identity=78.2089552238806, Blast_Score=552, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 55186; Mature: 55186

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQ
CCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEHHHH
YAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCEEEEECCHHH
RIQTIYQPGSFTPLIRVETATGEQAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRL
HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHH
ESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCC
ATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCEECCCC
IGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLR
CCCCCCCCEEECCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
LPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDIKTASDY
CCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCEECCCCCCCCCCCCCCCHHHC
LPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQ
CCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEHHHH
YAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCEEEEECCHHH
RIQTIYQPGSFTPLIRVETATGEQAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRL
HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHH
ESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCC
ATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCEECCCC
IGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLR
CCCCCCCCEEECCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
LPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDIKTASDY
CCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCEECCCCCCCCCCCCCCCHHHC
LPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]