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The map label for this gene is ybfM

Identifier: 218694109

GI number: 218694109

Start: 725664

End: 727070

Strand: Direct

Name: ybfM

Synonym: EC55989_0667

Alternate gene names: 218694109

Gene position: 725664-727070 (Clockwise)

Preceding gene: 218694108

Following gene: 218694110

Centisome position: 14.08

GC content: 51.1

Gene sequence:

>1407_bases
ATGCGTACGTTTAGTGGCAAACGTAGTACGCTGGCGCTGGCTATCGCCGGTGTTACAGCAATGTCGGGCTTTATGGCAAT
GCCGGAGGCTCGCGCCGAAGGATTCATCGACGATTCAACCTTAACCGGCGGTATATATTACTGGCAGCGTGAACGCGACC
GTAAAGATGTTACCGACGGCGACAAATACAAAACCAACCTTTCTCACTCCACTTGGAATGCCAACCTCGATTTTCAGTCC
GGTTATGCTGCTGATATGTTCGGCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCA
CCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCGGCGACAAAAGCGGTATAAGCCTGT
ATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCGAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTA
GCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGC
GTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGCATCTGGAAATGGATGAGTTTTATCAGAACGATA
AAACCACCAAAGTTGATTATCTGCACTCCCTTGGGGCGAAATACGACTTCAAAAATAACTTCGTACTGGAAGCGGCATTT
GGTCAGGCGGAAGGGTATATCGATCAATATTTTGCCAAAGCCAGCTACAAATTTGATATCGCCGGTAGCCCGTTAACCAC
CAGCTACCAGTTCTACGGTACCCGCGATAAAGTTGACGATCGCAGCGTCAACGATCTTTATGACGGCACCGCTTGGCTGC
AAGCATTGACCTTTGGTTACCGGGCGGCTGACGTAGTGGATTTGCGCCTTGAAGGCACCTGGGTTAAGGCTGACGGTCAG
CAGGGATACTTCCTGCAACGTATGACTCCAACCTACGCTTCCTCGAACGGTCGCCTGGATATCTGGTGGGATAACCGTTC
CGACTTCAACGCTAACGGAGAAAAAGCGGTCTTCTTCGGTGCGATGTATGACCTGAAAAACTGGAATCTTCCAGGCTTCG
CCATCGGCGCTTCCTACGTTTACGCATGGGATGCTAAACCTGCGACCTGGCAGAGCAATCCGGATGCGTACTACGACAAA
AACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTACACCATTCAGGACGGCCGCGCCAAAGGCACGATGTT
CAAACTGCACTTCACCGAATACGACAACCACTCTGACATCCCAAGCTGGGGCGGCGGTTACGGTAACATCTTCCAGGATG
AGCGTGACGTGAAATTTATGGTAATCGCACCATTCACCATCTTCTGA

Upstream 100 bases:

>100_bases
CTGTAGTCAGCGAGACTTTTCTCAACGCTACTTTTTTAATTTTTATTTTTTCGCTGTTCACCTTTGGTGCAGCAATTTAT
ACGTCAAAGAGGATTAACCC

Downstream 100 bases:

>100_bases
TGCCCGACGCGGCAGGTTTTGTGCCTGCCGCACGTTTGAGGAATTTGCTATGAAAAAACTGATTCTCATCGCCATGATGG
CATCGGGGCTGGTAGCTTGT

Product: putative outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSLGAKYDFKNNFVLEAAF
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF

Sequences:

>Translated_468_residues
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSLGAKYDFKNNFVLEAAF
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
>Mature_468_residues
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSLGAKYDFKNNFVLEAAF
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=468, Percent_Identity=99.7863247863248, Blast_Score=958, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52746; Mature: 52746

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHCCCCCCCEEECCEEEEECCCCCCCCCCC
DKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAY
CCEEECCCCCEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSLGAKYDFKNNFVLEAAF
CCCCCCCEEEEEEEECCCCCCEEEEHHHHHCCCCCCHHHHHHHCCCCEECCCCEEEEEEC
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGY
CCCCCHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
RAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
CCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEEEECC
RAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEC
>Mature Secondary Structure
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHCCCCCCCEEECCEEEEECCCCCCCCCCC
DKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAY
CCEEECCCCCEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSLGAKYDFKNNFVLEAAF
CCCCCCCEEEEEEEECCCCCCEEEEHHHHHCCCCCCHHHHHHHCCCCEECCCCEEEEEEC
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGY
CCCCCHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
RAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
CCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEEEECC
RAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]