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The map label for this gene is ybdO

Identifier: 218694045

GI number: 218694045

Start: 652278

End: 653180

Strand: Reverse

Name: ybdO

Synonym: EC55989_0596

Alternate gene names: 218694045

Gene position: 653180-652278 (Counterclockwise)

Preceding gene: 218694046

Following gene: 218694044

Centisome position: 12.67

GC content: 38.76

Gene sequence:

>903_bases
ATGGCCAATCTCTACGACTTGAAAAAGTTCGACTTAAACCTTCTTGTCATATTTGAGTGTATTTACCAGCATTTAAGCAT
TAGCAAAGCTGCTGAATCACTATATATCACCCCATCAGCCGTGAGCCAGTCGTTACAACGCTTACGTGCGCAATTTAATG
ACCCTTTATTCATTCGCTCAGGAAAAGGTATCGCGCCGACGACAACAGGGTTGAATCTGCATCACCATCTTGAGAAAAAC
CTCAAAGGCCTTGAACAAACAATTAATATAGTCAATAAGTCCGAACTAAAGAAAAACTTTATTATCTACGGCCCTCAGCT
CATTTCTTGCTCTAATAATAGTATGCTGATCCGCTGCCTACGGCAAGATGCCTCTGTCGAGATTGAGTGCCATGATATCC
TCATGTCAGCAGAGAATGCTGAAGAACTGTTGGTTCACCGCAAAGCCGATCTGGTGATCACCCAAATGCCAGTGATCAGC
CGTTCCGTCATTTGCATGCCATTGCATACAATTCGCAATACTCTAATTTGTAGTAATAAGCATCCGCGAATTACTGACAA
TAGCACTTATGAACAAATTATGGCAGAAGAGTTCACCCAATTAATATCCAAATCAGCAGGAGTTGATGATATTCAAATGG
AAATAGACGAGAGATTTATGAATCGCAAAATCTCATTTCGTGGTTCCTCTTTGCTGACAATCATTAATAGCATTGCAGTT
ACAGATTTACTGGGAATAGTCCCCTATGAACTTTATAATTCCTACCGTGACTTTCTTAATTTAAAAGAGATAAAACTAGA
ACATCCGTTACCTTCAATAAAGCTTTACATTTCCTATAATAAATCTTCTTTAAATAATTTGGTGTTCTCCCGATTTATTG
ACCGTCTAAATGAGAGTTTTTGA

Upstream 100 bases:

>100_bases
TCCTGAGTTAAGCAAAAAAATATAATCAATAAAAATATATACGCAAAAAACATTGATTAAGTGAATATACCATGGAAGAA
AAATATAACCGGAGTAGTGT

Downstream 100 bases:

>100_bases
TATATAACTACAGACAGCTACTATAACTTTCATCTATTTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAG
TGTTTACTTTATAATTAACA

Product: putative DNA-binding transcriptional regulator, LysR-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKN
LKGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVIS
RSVICMPLHTIRNTLICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF

Sequences:

>Translated_300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKN
LKGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVIS
RSVICMPLHTIRNTLICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
>Mature_299_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNL
KGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVISR
SVICMPLHTIRNTLICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVT
DLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=300, Percent_Identity=99, Blast_Score=608, Evalue=1e-175,
Organism=Escherichia coli, GI87081766, Length=299, Percent_Identity=30.1003344481605, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87081684, Length=286, Percent_Identity=24.4755244755245, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34325; Mature: 34194

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGIAPTTTGLNLHHHLEKNLKGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHHH
RQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNK
HCCCCEEEEHHHHHHCCCCHHHHHHHHHCCEEEEECCHHHHHHHEEEHHHHHHHEEECCC
HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
HHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGIAPTTTGLNLHHHLEKNLKGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHHH
RQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNK
HCCCCEEEEHHHHHHCCCCHHHHHHHHHCCEEEEECCHHHHHHHEEEHHHHHHHEEECCC
HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
HHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]