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The map label for this gene is sfmC

Identifier: 218693994

GI number: 218693994

Start: 586779

End: 587471

Strand: Direct

Name: sfmC

Synonym: EC55989_0545

Alternate gene names: 218693994

Gene position: 586779-587471 (Clockwise)

Preceding gene: 218693993

Following gene: 218693995

Centisome position: 11.38

GC content: 43.15

Gene sequence:

>693_bases
ATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGAT
CGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATG
AGCGTTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTT
GTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTT
CTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTAT
CGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAGAAGCGCCGGACACACTCAAGTTTTCGCGA
TCCGGTAACTATATCAATGTTCATAATCCATCACCTTTTTATGTCACCCTCGTTAACCTGCAAGTGGGCAGCCAAAAGTT
GGGGAATGCTATGGCGGCACCCAGAGTTAGTTCACAAATTCCCTTACCCTCAGGAGTGCAGGGAAAGCTGAAATTTCAGA
CCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAA

Upstream 100 bases:

>100_bases
TTATTAAATGAAAAGGGAATGATGTGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTTCTTATTTTTGCCGTCAGGA
ATACACAAGGCGTATTAACT

Downstream 100 bases:

>100_bases
CCGAATCATCTGACAATATCAGAGCTAATTATGAAAATACCCACTACTACGGATATTCCGCAGAGGTATACCTGGTGTCT
GGCCGGAATTTGTTATTCAT

Product: pilin chaperone, periplasmic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Sequences:

>Translated_230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>Mature_230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Specific function: Required for the biogenesis of sfmA fimbriae. Binds and interact with sfmH [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786743, Length=230, Percent_Identity=99.5652173913043, Blast_Score=466, Evalue=1e-133,
Organism=Escherichia coli, GI1790771, Length=218, Percent_Identity=46.7889908256881, Blast_Score=209, Evalue=9e-56,
Organism=Escherichia coli, GI1787171, Length=207, Percent_Identity=40.5797101449275, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789532, Length=220, Percent_Identity=35, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=31.3807531380753, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1786936, Length=233, Percent_Identity=33.9055793991416, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=27.5423728813559, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788677, Length=208, Percent_Identity=34.1346153846154, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=30.316742081448, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082203, Length=170, Percent_Identity=32.9411764705882, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25431; Mature: 25431

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNS
CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC
>Mature Secondary Structure
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNS
CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]