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The map label for this gene is ssb

Identifier: 218692910

GI number: 218692910

Start: 98355

End: 98921

Strand: Reverse

Name: ssb

Synonym: p1ECUMN_0125

Alternate gene names: 218692910

Gene position: 98921-98355 (Counterclockwise)

Preceding gene: 218692911

Following gene: 218692909

Centisome position: 80.88

GC content: 56.79

Gene sequence:

>567_bases
ATGATGGGGGCTGAAAACATCAACAGAAGGAGACACATCATGGCAGTTCGTGGAATTAACAAGGTCATTCTTGTCGGTCG
TCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCAGAAACCT
GGCGCGACAAACAGACGGGGGAAATGAAGGAACAGACGGAATGGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTG
GCAGGTGAATATCTGCGTAAGGGCGCGCAGGTCTACATCGAGGGGCAACTCCGTACCCGTAGCTGGGAAGATAACGGTAT
TACCCGTTACGTCACTGAAATCCTTGTGAAAACCACGGGCACCATGCAGATGCTGGGGAGTGCACCACAGCAGAACGCTC
AGGTGCAACCGCAGCCTCAGCAGAACGGCCAGCCACAGAGTGCTGACGCAACGAAAAAAGGGAGCGCGAAAACGAAAGGC
CGTGGACGTAAGGCTGCGCAGCCGGAGCCTCAGCCGCAACCGCCGGAGGGTGAGGATTACTGGTTTTCAGACGATATCCC
GTTCTGA

Upstream 100 bases:

>100_bases
CTTGCGGCGAAGGTTCTCAAACAGGTGATGGTGAATACCGGAGGGAACAAAAGGCAGGTCCCCGCAAAACGTCAAAACCG
CGGCTCCCGAAACTCAACAG

Downstream 100 bases:

>100_bases
ATGACTGACTGTGAAAACCGCCCCGTCCAGTGCGGGGCATCACCGGAGAGATGAGGATGAGCGAATATTTCAGAATACTT
CAGGGGCTGCCTGACGGCTC

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MMGAENINRRRHIMAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEV
AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQPQSADATKKGSAKTKG
RGRKAAQPEPQPQPPEGEDYWFSDDIPF

Sequences:

>Translated_188_residues
MMGAENINRRRHIMAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEV
AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQPQSADATKKGSAKTKG
RGRKAAQPEPQPQPPEGEDYWFSDDIPF
>Mature_188_residues
MMGAENINRRRHIMAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEV
AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQPQSADATKKGSAKTKG
RGRKAAQPEPQPQPPEGEDYWFSDDIPF

Specific function: May contribute to the conjugative processing of DNA. It has a functional relationship with Psi (plasmid-mediated sos inhibition) proteins [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=106, Percent_Identity=34.9056603773585, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1790494, Length=182, Percent_Identity=58.7912087912088, Blast_Score=190, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 21016; Mature: 21016

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGAENINRRRHIMAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTG
CCCCCCCCHHHEEEEECCCCEEEEEEECCCCCCEEEECCCCCEEEEEEECCCCCCCCCCC
EMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC
TMQMLGSAPQQNAQVQPQPQQNGQPQSADATKKGSAKTKGRGRKAAQPEPQPQPPEGEDY
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WFSDDIPF
EECCCCCC
>Mature Secondary Structure
MMGAENINRRRHIMAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTG
CCCCCCCCHHHEEEEECCCCEEEEEEECCCCCCEEEECCCCCEEEEEEECCCCCCCCCCC
EMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC
TMQMLGSAPQQNAQVQPQPQQNGQPQSADATKKGSAKTKGRGRKAAQPEPQPQPPEGEDY
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WFSDDIPF
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2651402 [H]