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The map label for this gene is fimD-fimH [H]

Identifier: 218692722

GI number: 218692722

Start: 5131367

End: 5133103

Strand: Direct

Name: fimD-fimH [H]

Synonym: ECED1_5202

Alternate gene names: 218692722

Gene position: 5131367-5133103 (Clockwise)

Preceding gene: 218692721

Following gene: 218692723

Centisome position: 98.5

GC content: 48.3

Gene sequence:

>1737_bases
ATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATAGTTTGGCTGGTTTTTT
TGTCCGACTCTTTGTTGCCTGTGCTTTTGCCGTACAGGCACCTTTGTCATCTGCCGAACTCTATTTTAACCCGCGTTTTT
TAGCGGATGATCCCCAGGCTGTGGCTGATTTATCGCGTTTTGAAAATGGGCAAGAATTACCGCCAGGGACGTATCGTGTT
GATATCTATTTGAATAATGGTTATATGGCAACGCGTGATGTCACATTTAATACGGGCGACAGCGAACAAGGGATTGTTCC
CTGCCTGACACGCGCGCAACTTGCCAGTATGGGGCTGAATACGGCTTCTGTCTCCGGTATGAATCTGCTGGCGGATGATG
CCTGCGTGCCATTAACCTCAATGATCCATGACGCTACTGCGCATTTAGATGTTGGTCAGCAGCGACTCAACCTGACGATC
CCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCT
CAATTATAATTTCAGCGGAAATAGTGTACAGAATCGAATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTG
GGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGTTCATCAGGTAGCAAA
AATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATTCCGTTACGTTCCCGGCTGACGTTGGGTGATGGTTA
TACTCAGGGCGATATTTTCGATGGTATTAACTTTCGCGGCGCACAATTGGCCTCAGATGACAATATGTTACCCGATAGCC
AAAGAGGATTTGCCCCGGTGATCCACGGTATTGCTCGTGGTACCGCAATCCCTATTGGCGGTGGCAGCGCCAATGTTTAT
GTAAACCTTGCGCCTGCCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA
CCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGTTCGGCTTATGGCGGCGTGTTATCTAGTTTTTCCGGGACCG
TAAAATATAATGGCAGTAGCTATCCTTTCCCTACTACCAGCGAAACGCCGCGGGTTGTTTATAATTCGAGAACGGATAAG
CCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGGGGAGTGGCGATTAAAGCAGGCTCATTAATTGCCGT
GCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGG
TGGTGCCCACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCGGGTTCAGTGCCGATT
CCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTATCCGGCACAACCGCAGATGCGGGCAACTCGAT
TTTCACCAATATCGCGTCGTTTTCACCCGCGCAGGGCGTCGGCGTACAGTTGACGCGCAACGGTACGATTATTCCAGCGA
ATAACACGGTATCGTTAGGAGCAGTAGGGACTTCGGCGGTAAGTCTGGGATTAACGGCAAATTACGCACGTACCGGAGGG
CAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAA

Upstream 100 bases:

>100_bases
GGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGATTTGCCTGAATAAAAAGAATTGACTGCCGGG
TGATTTAAACCGGAGGAATA

Downstream 100 bases:

>100_bases
AGAAATCACAGGGCATTGCTAATGCAGGTACGCAATATTACCTGAAGCTAAAACCTGCACGTTAGCCCTTTGTAGGCCAG
ATAAGACGCGTCAGCGTCGC

Product: outer membrane usher protein FimD/type 1 fimbriae minor component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 577

Protein sequence:

>578_residues
MSYLNLRLYQRNTQCLHIRKHSLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRV
DIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTI
PQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAIPIGGGSANVY
VNLAPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDK
PWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI
PLTVYCAKSQNLGYYLSGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGG
QVTAGNVQSIIGVTFVYQ

Sequences:

>Translated_578_residues
MSYLNLRLYQRNTQCLHIRKHSLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRV
DIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTI
PQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAIPIGGGSANVY
VNLAPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDK
PWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI
PLTVYCAKSQNLGYYLSGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGG
QVTAGNVQSIIGVTFVYQ
>Mature_577_residues
SYLNLRLYQRNTQCLHIRKHSLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVD
IYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIP
QAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKN
KWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAIPIGGGSANVYV
NLAPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDKP
WPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIP
LTVYCAKSQNLGYYLSGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQ
VTAGNVQSIIGVTFVYQ

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=326, Percent_Identity=92.9447852760736, Blast_Score=636, Evalue=0.0,
Organism=Escherichia coli, GI1790775, Length=274, Percent_Identity=98.1751824817518, Blast_Score=533, Evalue=1e-152,
Organism=Escherichia coli, GI1787172, Length=282, Percent_Identity=50.354609929078, Blast_Score=281, Evalue=7e-77,
Organism=Escherichia coli, GI1786744, Length=273, Percent_Identity=47.6190476190476, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1787779, Length=270, Percent_Identity=50.3703703703704, Blast_Score=255, Evalue=6e-69,
Organism=Escherichia coli, GI1789533, Length=270, Percent_Identity=41.8518518518518, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1786332, Length=320, Percent_Identity=33.75, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI1788427, Length=281, Percent_Identity=30.6049822064057, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081778, Length=279, Percent_Identity=30.4659498207885, Blast_Score=121, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 62229; Mature: 62098

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLNLRLYQRNTQCLHIRKHSLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQA
CCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCHHH
VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
HHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
TASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
CCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCHHHCCC
GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
CCCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCC
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
CHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHH
IHGIARGTAIPIGGGSANVYVNLAPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRG
HHHHHCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHHHHEEEEECC
SAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIK
CCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEE
AGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI
CCCEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCC
PLTVYCAKSQNLGYYLSGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLG
EEEEEEECCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEECCCEEEECCCEEEEE
AVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ
CCCCCEEEEEEEECHHCCCCEEEECCHHEEEEEEEEEC
>Mature Secondary Structure 
SYLNLRLYQRNTQCLHIRKHSLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQA
CEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCHHH
VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
HHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
TASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
CCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCHHHCCC
GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
CCCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCC
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
CHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHH
IHGIARGTAIPIGGGSANVYVNLAPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRG
HHHHHCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHHHHEEEEECC
SAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIK
CCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEE
AGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI
CCCEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCC
PLTVYCAKSQNLGYYLSGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLG
EEEEEEECCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEECCCEEEECCCEEEEE
AVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ
CCCCCEEEEEEEECHHCCCCEEEECCHHEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]