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The map label for this gene is shf [H]

Identifier: 218692672

GI number: 218692672

Start: 5079993

End: 5080814

Strand: Reverse

Name: shf [H]

Synonym: ECED1_5144

Alternate gene names: 218692672

Gene position: 5080814-5079993 (Counterclockwise)

Preceding gene: 218692676

Following gene: 218692671

Centisome position: 97.53

GC content: 39.17

Gene sequence:

>822_bases
TTGTTTAAAGCAAATCATGTTCCGGTATTAATGTATCATCATGTCAGCCATTGCCCAGGACTGGTTACACTTTCTCCCGA
GACATTCCGGAAACAAATGAAATGGTTGGCTGAAAACAACTGGAAAACACTGTCATCAGATGAACTGGAGTTTTTTTATC
GGGGCGGAAAACTTCCCCGTAAAAGCGTTATGTTGACATTTGATGATGGATACCTTGACAACTGGTTTCAGGTATATCCT
TTATTAAACGAGTTTAATCTCAAGGCACATATTTTTTTAATTACCAGTTTTATTGGAAATGGTCCGGTTCGTCACTCTCC
TGGAAAGGAATATTCTCATCGCGATTGCGAACATCAAATAGCAACCGGGAATGCTGATAATGTTATGCTTCGCTGGTCTG
AAGTGAACGAAATGTTGCAATCTGGTCTGGTCGAATTTCATGTTCATACACATACTCATACACGTTGGGATAAAAAGCTC
ACTTCACGAGAAGAACAGTGTAAACATCTTCGGCAGGACTTATTGAGCGGGAGAGAATATTTAAAAAAAATGACAGGAAA
ATGCAGTAAACATTTGTGTTGGCCGGAAGGTTATTATAACAAGGATTATATTCAGATCGCTGAAGAACTTGGATTCCATT
ATTTATATACAACAGAAAGAAGAATGAATGCTCCTGCTAAAGGAACTACACGGATAGGAAGAATAAGCACCAAGGAACGG
GAAAATTGCGTATGGCTGAAAAGACGACTTTTTTATTATACAACACCGTTTTTTTCATCGTTGCTGGCCCTTCATAAGGG
GCCAAGATTACCGGATGACTAA

Upstream 100 bases:

>100_bases
TGATTTAGTAGTATATAAAGCTCACCAACTTTATTAGGCTTTCCTTTTATCTCTACTTACTGGGTGCCAGAAACTTTAAA
TTTTAAACGGAGGGGGCATT

Downstream 100 bases:

>100_bases
TAATGAATATACTATTTACGGAATCATCACCGAATATAGGTGGTCAGGAATTACAGGCTGTTGCTCAAATGAAGGCCCTG
AAGAAAATGGGGCATTCAGT

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYP
LLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKL
TSREEQCKHLRQDLLSGREYLKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD

Sequences:

>Translated_273_residues
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYP
LLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKL
TSREEQCKHLRQDLLSGREYLKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD
>Mature_273_residues
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYP
LLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKL
TSREEQCKHLRQDLLSGREYLKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=245, Percent_Identity=27.3469387755102, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787260, Length=246, Percent_Identity=25.609756097561, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 32261; Mature: 32261

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPR
CCCCCCCCEEEEEHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCC
KSVMLTFDDGYLDNWFQVYPLLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQI
CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHH
ATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKLTSREEQCKHLRQDLLSGREY
CCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCEECCCCCCCH
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD
HHHHHHHHHHHHEECHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPR
CCCCCCCCEEEEEHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCC
KSVMLTFDDGYLDNWFQVYPLLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQI
CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHH
ATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKLTSREEQCKHLRQDLLSGREY
CCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCEECCCCCCCH
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD
HHHHHHHHHHHHEECHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]