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The map label for this gene is ydiF [H]

Identifier: 218692591

GI number: 218692591

Start: 4989420

End: 4990961

Strand: Reverse

Name: ydiF [H]

Synonym: ECED1_5058

Alternate gene names: 218692591

Gene position: 4990961-4989420 (Counterclockwise)

Preceding gene: 218692592

Following gene: 218692590

Centisome position: 95.8

GC content: 53.31

Gene sequence:

>1542_bases
ATGCGTAAGTTATCAACCGCCGAGACACTGGCGGCGCAAATTCAGGACGGCGCAACCATTGCCATTAGCGGTAACGGCGG
CGGCATGGTGGAAGCTGACCATATTCTGGCCGCCATTGAAGCGCGCTTTCTGCAAACCGGACACCCGCGCGATCTGACAT
TAATCCACTCGCTGGGTATTGGCGATCGCGACAGCAAAGGCACTAACCGTTTTGCTCACGCCGAAATGCTCAAACGCATT
ATTGCCGGACATTTTACCTGGTCGCCCAAGATGCAGGAACTGGTGAAAAGCAATGCTATTGAAGCCTACTGTTTCCCTGG
TGGCGTAATTCAGGCACTGCTGCGGGAGATCGGTGCCGGACGTCCGGGGCTTTTTACCCACGTTGGGCTGGGATCGTTTG
TTGATCCACGCAATGGTGGCGGTAAGTCGAATGAATGCACTACCGACGACCTGGTAGAACTGATTGAAATCGACGGTGAG
ACCAAACTTCGTTATCGCCCTTTCAAAGTGGACTACGCGATTTTGCGCGGCACCTATGCCGATCCGCGTGGCAACGTCAG
CCTCGAAGAAGAGGCGATTGATATGGATAGCTATTCGATGGCGCTGGCAGCACACAACAGCGGCGGCAAAGTGTTCGTAC
AGGTCCGCGATGTGCTGGAAGCAGGTACCATTGAACCACGTCGGGTCAAACTACCAGGAATTCTGGTCGATGGCATCGTT
GAGCACCGCGAACAACCGCAAACCTATCTTGGCGGTTACGACCTGACCATCAGCGGTCAACATCGCCGTCTAAGTTCTAA
CGACGCTATTGAACTGGTTAGTCATCCGGTGCGTCGCCTGATTGCCCGTCGGGCAGCGCGGGAACTGGTGGCAGGCGCTT
CAACCAACTTTGGCTTTGGTATTCCGGGCGGTATTCCTGGGGTTGCGCTGCGCGAAGGCGTGCCTTATCAAAGTTTATGG
CTGAGCGTCGAGCAAGGCGTACATAACGGCATGATGCTTGATGATGCTCTGTTTGGTTGTGCCCGCAACGCCGATGCCAT
TATTCCATCACTCGATCAATTTGAGTTCTACAGTGGCGGAGGGATCGATATCACCTTCCTCGGCATGGGAGAGATGGATC
AGTACGGTAACGTCAACGTATCCCATCTCAATGGCAATCTCATTGGTCCCGGCGGTTTTCTCGAAATTGCGCAAAACGCC
CGTAAAGTGGTGTTCTGCGGCACGTTCGACGCCAAAGGTAGCAAGATTGATGTAACGCCAGATGGCTTGCATATCGCCCA
GTCAGGTCAAATCCCTAAACTGGTTACCCAGGTGGAAAAAATCACTTTTAGCGCCGCCTACGCACAGCAAAGTGGTCAGG
AAGTGTTGTATATCACTGAACGCGCAGTATTCCAGTTAACGGCAGAAGGCGTTGAATTAATTGAAATCGCGTCGGGTGTG
GAGATTGAGCGCGACATTCTGCCGTATATGGCTTTCCGTCCAATTATCAAGCACCCACGCCTGATGGAAAGTAGCCTGTT
TACGCCGATGGAGGATGCATGA

Upstream 100 bases:

>100_bases
GCTGGCTGGATTAATGTCCGCCACTCAGGATTGCCAGCAGGCGACGCGCGCATTTGCCGAAAAAGCCGGCGTGAGCTTCC
ACAATCAATAAGGAAATTGT

Downstream 100 bases:

>100_bases
GTCAGCTTGATGACACCATCCTTGATGCGCTGACGCACGTTACTTTCCCAAAGGGTTTTGCACAGGCAGAGCCCGCATGG
GTTGTCACGGTAGACGGTGT

Product: putative CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRKLSTAETLAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGTIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIASGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA

Sequences:

>Translated_513_residues
MRKLSTAETLAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGTIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIASGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
>Mature_513_residues
MRKLSTAETLAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGTIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIASGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=495, Percent_Identity=23.8383838383838, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI11545841, Length=417, Percent_Identity=25.6594724220624, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787985, Length=506, Percent_Identity=39.7233201581028, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1788551, Length=249, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 55575; Mature: 55575

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLSTAETLAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDSKGTNRFAHAEMLKRIIAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGETKLRYRPFKVDYAILRGTYA
CCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGTIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDVTP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEECCC
DGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIASGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEHHCCEEEEHHHCCC
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MRKLSTAETLAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDSKGTNRFAHAEMLKRIIAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGETKLRYRPFKVDYAILRGTYA
CCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGTIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDVTP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEECCC
DGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIASGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEHHCCEEEEHHHCCC
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]