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The map label for this gene is htrL [H]

Identifier: 218691905

GI number: 218691905

Start: 4229965

End: 4230822

Strand: Reverse

Name: htrL [H]

Synonym: ECED1_4304

Alternate gene names: 218691905

Gene position: 4230822-4229965 (Counterclockwise)

Preceding gene: 218691910

Following gene: 218691904

Centisome position: 81.21

GC content: 36.95

Gene sequence:

>858_bases
ATGAAATCATCCACCACAATTATCACTGCATATTTTGACATTGGTAGAGGGGATTGGACTGCTAATAAAGGGTTCCGTGA
AAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAAATGATTATTTTCA
CTTCTCCCGATTTGAAATCAAGGGTTGAAGCGATTCGCAACGGAAAACCAACAACGGTTATCGTTATCGATATAAAAAAG
AAATTTAGATATATCAGAAGTCGTATCGAAAAAATTCAAAAAGATGAGTCGTTTACAAATAGACTTGAGCCGCGGCAATT
AAAAAACCCAGAGTACTGGTCACCAGAGTATGTATTGGTATGTAACCTTAAGGCCTATTTTGTAAATAAAGCTATCAACA
TGGGCTTAGTGAAAACTCCTCTTGTTGCGTGGATAGATTTTGGCTATTGCCGTAAGCCAAATGTAACTCGAGGATTGAAA
ATTTGGGATTTCCCATTTGATGAAAATAAGATGCATCTTTTCACTATAAAAAAAGGGCTTGCTGTTACATCTCAACAACA
GGCTTTTGATTTCATGATTGGCAATCATGTATATATTATTGGTGGCGCAATTGTTGGTTCACAGCATAAATGGAAAGAAT
TCTATAAATTAGTTCTGGAAAGTCAAAAAATAACCCTAAACAATAACATTGTGGACGATGACCAGGGCATTTTTGTCATG
TGCTATTACAAACGTTCCGATCTCTTCAACCTAAACTATCTGGGGAGAGGAAAATGGTTCGATTTGTTTCGCTGCTTCAG
GAGTAACACTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAG

Upstream 100 bases:

>100_bases
TATGATAAATAACTGAAACATTTGAATGGATAATATACAGTATACATTCTGTTAATATTTATGATATAATTCTTTTTTTA
TATTAATGGTCTTATTAGTA

Downstream 100 bases:

>100_bases
GTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAAATGAGATTGGAAAAATGATGCTCTGGCATCATTTTTTCTTTTTA
TAGAAATGCAGTAAAATCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKSRVEAIRNGKPTTVIVIDIKK
KFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLK
IWDFPFDENKMHLFTIKKGLAVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVM
CYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK

Sequences:

>Translated_285_residues
MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKSRVEAIRNGKPTTVIVIDIKK
KFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLK
IWDFPFDENKMHLFTIKKGLAVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVM
CYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK
>Mature_285_residues
MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKSRVEAIRNGKPTTVIVIDIKK
KFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLK
IWDFPFDENKMHLFTIKKGLAVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVM
CYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK

Specific function: Involved in lipopolysaccharide biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082299, Length=285, Percent_Identity=97.8947368421053, Blast_Score=579, Evalue=1e-167,
Organism=Caenorhabditis elegans, GI17564284, Length=282, Percent_Identity=24.468085106383, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011735 [H]

Pfam domain/function: PF09612 HtrL_YibB [H]

EC number: NA

Molecular weight: Translated: 33426; Mature: 33426

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKS
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
RVEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLV
HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCHHHHHCCCCHHCCCCCCCCCCEEEE
CNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLKIWDFPFDENKMHLFTIKKGL
EECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCC
AVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVM
EECCHHHHHHEEECCEEEEEEEEEECCCHHHHHHHHHHHCCCEEEECCCEEECCCCEEEE
CYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK
EEEECCCEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKS
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
RVEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLV
HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCHHHHHCCCCHHCCCCCCCCCCEEEE
CNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLKIWDFPFDENKMHLFTIKKGL
EECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCC
AVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVM
EECCHHHHHHEEECCEEEEEEEEEECCCHHHHHHHHHHHCCCEEEECCCEEECCCCEEEE
CYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK
EEEECCCEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 3287333 [H]