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The map label for this gene is rbsC [H]

Identifier: 218691542

GI number: 218691542

Start: 3841639

End: 3842628

Strand: Reverse

Name: rbsC [H]

Synonym: ECED1_3910

Alternate gene names: 218691542

Gene position: 3842628-3841639 (Counterclockwise)

Preceding gene: 218691543

Following gene: 218691541

Centisome position: 73.76

GC content: 41.52

Gene sequence:

>990_bases
ATGACAGAGAAAACTCTTGCCAGTCCGAAACCTTCGGAAATTCCCATTGCAAATAATTTTAAAAAAGTCTTCAGGCAATA
TGGTGGTATCCTCAGTGGAATGGTGGTGTTAATCATTCTGTTCAGTTTTATTAATGACAGTTTTTTTACCGCCAATAACA
TTACTAATATTATTCTTCAGGTTTCGATAATTGCAATTACCGCCTATGGAATGACTTATGTGCTTTTGCTTGGCGATATT
GATTTATCGGTCGGTTCAACCATTGCATTGATTGGCACATTTGCTGCGCTTGGGGCTTCATGGGGAATTCCATTTGTTTT
ATTGGTCCCATTATCCATTATTGCAGCACTGGCTTTGGGGATGATAAATGGTGGCTTGACGGCTATAGCGGGGATCCCTT
CGTTTATTGTCACCGTTGCTACTATGGGGATCTTCCGTGGTATTGCTTATATAGTGACCGATGGTATGCCCATCATGATT
AAAGATGATGCTTTTCTGGCGCTGGGGAATGGAGAATTTCTCTATATACCTATTCCTATATGGATATTAATCATCTTATT
GCTGATAAACCACTTCATTCTTACTAAAACAACCTTTGGACGAAAAATTTATATCACTGGTGGTAATAAAGAAGCGGCAA
TTTATTCAGGGATAAATGTCACCCGCTTGAAAATTAAAGTCTTTATGATTACAGCCGTGCTGGCAGGTATCAGCGGGATG
ATCCTTGCCTCACGCCTCTATTCCGGGCAACCGAATTCCGCGTTGAGCTACGAACTGGATGCTATTGCCGCGGCTGTACT
GGGAGGCACCAGCCTGAATGGCGGCTATGGAACCGTGGTGGGGACGGTGATCGGCGCATTAACCATCGGCGTTATTAATA
ATGGCATGAACTTAATGAATGTTCCTTATTTTTACCAGATGGTGGTTAAAGGATTAGTCATTCTTGTAGCCGTTTATTTT
GACGTAAGAAATAAAAGAAAACGCAGCTAA

Upstream 100 bases:

>100_bases
TCGTCTGGTGGTAATGCGTAATAAAACGATTGCCGATATTTATTCATGTGAAAATTTAACGCAGACACAGGTAATGACCG
CTGCAACAGGAGTACGTTAA

Downstream 100 bases:

>100_bases
TCATTTCAAGGAATTAATCATATGAGTAAGGTCTTCACAATTGGAGAAATTCTGGTTGAAATTATGGCGAGTAAAATCGG
CCAGCCATTTGATCAACCAG

Product: putative sugar ABC transporter membrane protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDI
DLSVGSTIALIGTFAALGASWGIPFVLLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMI
KDDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
ILASRLYSGQPNSALSYELDAIAAAVLGGTSLNGGYGTVVGTVIGALTIGVINNGMNLMNVPYFYQMVVKGLVILVAVYF
DVRNKRKRS

Sequences:

>Translated_329_residues
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDI
DLSVGSTIALIGTFAALGASWGIPFVLLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMI
KDDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
ILASRLYSGQPNSALSYELDAIAAAVLGGTSLNGGYGTVVGTVIGALTIGVINNGMNLMNVPYFYQMVVKGLVILVAVYF
DVRNKRKRS
>Mature_328_residues
TEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDID
LSVGSTIALIGTFAALGASWGIPFVLLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIK
DDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGMI
LASRLYSGQPNSALSYELDAIAAAVLGGTSLNGGYGTVVGTVIGALTIGVINNGMNLMNVPYFYQMVVKGLVILVAVYFD
VRNKRKRS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=42.6282051282051, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI145693152, Length=323, Percent_Identity=39.938080495356, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1788896, Length=329, Percent_Identity=32.8267477203647, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=37.3040752351097, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=52.2058823529412, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87082395, Length=258, Percent_Identity=34.1085271317829, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787793, Length=302, Percent_Identity=30.1324503311258, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787794, Length=307, Percent_Identity=28.6644951140065, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=35.0393700787402, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=33.2335329341317, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35047; Mature: 34915

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
VSIIAITAYGMTYVLLLGDIDLSVGSTIALIGTFAALGASWGIPFVLLVPLSIIAALALG
HHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
MINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIKDDAFLALGNGEFLYIPIPI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEECHHH
WILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
HHHHHHHHHHHHHHEEECCCCEEEEECCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHH
ILASRLYSGQPNSALSYELDAIAAAVLGGTSLNGGYGTVVGTVIGALTIGVINNGMNLMN
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
VPYFYQMVVKGLVILVAVYFDVRNKRKRS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQ
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
VSIIAITAYGMTYVLLLGDIDLSVGSTIALIGTFAALGASWGIPFVLLVPLSIIAALALG
HHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
MINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIKDDAFLALGNGEFLYIPIPI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEECHHH
WILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
HHHHHHHHHHHHHHEEECCCCEEEEECCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHH
ILASRLYSGQPNSALSYELDAIAAAVLGGTSLNGGYGTVVGTVIGALTIGVINNGMNLMN
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
VPYFYQMVVKGLVILVAVYFDVRNKRKRS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]