Click here to switch to the map view.

The map label for this gene is yhcO [H]

Identifier: 218691521

GI number: 218691521

Start: 3818389

End: 3818661

Strand: Reverse

Name: yhcO [H]

Synonym: ECED1_3889

Alternate gene names: 218691521

Gene position: 3818661-3818389 (Counterclockwise)

Preceding gene: 218691522

Following gene: 218691518

Centisome position: 73.3

GC content: 42.86

Gene sequence:

>273_bases
ATGAATATTTATACCTTTGATTTTGATGAGATTGAGAGTCAGGAGGATTTTTATCGTGACTTTAGCCAAACCTTTGGTCT
GGCGAAAGATAAGGTACGCGATCTCGACTCACTATGGGATGAGTTAATGAACGATGTCCTGCCGCTACCACTTGAGATTG
AATTTGTTCATCTGGGAGAGAAAACGCGTCGCCGTTTTGGCGCGTTAATATTGCTGTTTGATGAGGCAGAGGAAGAGCTG
GAAGGGCATTTGCGTTTTAATGTTCGTCATTAG

Upstream 100 bases:

>100_bases
GATAGTTAAGTCAAAGCCGACGCCCGAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGAACGGCAGAACTCGCCGCG
AAACGTGACGGTGGCAACAG

Downstream 100 bases:

>100_bases
CGCAAAAAAAGCCCCCGAACCGGGGGCAATATCGTCGGACAAGACGATGAGGGTTTATTTGTACAGTTCAGCCGTAGCGT
GCCAGGTGTCACCACTACGA

Product: putative barnase inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDELMNDVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEEL
EGHLRFNVRH

Sequences:

>Translated_90_residues
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDELMNDVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEEL
EGHLRFNVRH
>Mature_90_residues
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDELMNDVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEEL
EGHLRFNVRH

Specific function: Unknown

COG id: COG2732

COG function: function code K; Barstar, RNAse (barnase) inhibitor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the barstar family [H]

Homologues:

Organism=Escherichia coli, GI1789635, Length=90, Percent_Identity=98.8888888888889, Blast_Score=179, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000468 [H]

Pfam domain/function: PF01337 Barstar [H]

EC number: NA

Molecular weight: Translated: 10826; Mature: 10826

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDELMNDVLPLPLEIEFVHLGE
CCEEECCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
KTRRRFGALILLFDEAEEELEGHLRFNVRH
HHHHHHCEEEEEECCCHHHCCCEEEEEECC
>Mature Secondary Structure
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDELMNDVLPLPLEIEFVHLGE
CCEEECCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
KTRRRFGALILLFDEAEEELEGHLRFNVRH
HHHHHHCEEEEEECCCHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]