Click here to switch to the map view.

The map label for this gene is sspB [H]

Identifier: 218691510

GI number: 218691510

Start: 3808812

End: 3809309

Strand: Reverse

Name: sspB [H]

Synonym: ECED1_3878

Alternate gene names: 218691510

Gene position: 3809309-3808812 (Counterclockwise)

Preceding gene: 218691511

Following gene: 218691509

Centisome position: 73.12

GC content: 55.02

Gene sequence:

>498_bases
ATGGATTTGTCACAGCTAACACCACGTCGTCCCTATCTGCTGCGTGCATTCTATGAGTGGTTGCTGGATAACCAGCTCAC
GCCGCACCTGGTGGTGGATGTGACGCTCCCTGGCGTGCAGGTTCCTATGGAATATGCGCGTGACGGGCAAATCGTACTCA
ACATTGCGCCGCGTGCTGTCGGCAATCTGGAACTGGCGAATGATGAGGTGCGCTTTAACGCGCGCTTTGGTGGCATTCCG
CGTCAGGTTTCTGTGCCGCTGGCTGCTGTGCTAGCTATCTACGCCCGTGAAAATGGCGCAGGCACGATGTTTGAGCCTGA
AGCTGCCTACGATGAAGATGCCAGCATCATGAATGATGAAGAGGCATCGGCAGACAACGAAACCGTTATGTCGGTTATCG
ATGGCGACAAGCCAGATCACGATGATGAAACTCATCCTGACGATGAACCTCCGCAGCCACCACGCGGTGGTCGACCGGCA
TTACGCGTTGTGAAGTAA

Upstream 100 bases:

>100_bases
AGCTGAAAGGCTATATGACCCGCGTATTTGAGCGTGACTCTTTCCTTGCTTCTTTAACTGAAGCAGAACGTGAAATGCGT
CTGGGCCGGAGTTAATCTGT

Downstream 100 bases:

>100_bases
AATGAAAACAGGCCCATGTGGCCTGTTTTGCTATCTGTCATCTTTTCGCCTGACTTTGATACTGTGCTACGATAGCGTCG
TTATTATCCGCTAACGCATT

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIP
RQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDASIMNDEEASADNETVMSVIDGDKPDHDDETHPDDEPPQPPRGGRPA
LRVVK

Sequences:

>Translated_165_residues
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIP
RQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDASIMNDEEASADNETVMSVIDGDKPDHDDETHPDDEPPQPPRGGRPA
LRVVK
>Mature_165_residues
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIP
RQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDASIMNDEEASADNETVMSVIDGDKPDHDDETHPDDEPPQPPRGGRPA
LRVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=165, Percent_Identity=98.7878787878788, Blast_Score=331, Evalue=2e-92,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 18247; Mature: 18247

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAV
CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCCCCEEEEEECCCCC
GNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDASIMNDE
CCEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC
EASADNETVMSVIDGDKPDHDDETHPDDEPPQPPRGGRPALRVVK
CCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAV
CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCCCCEEEEEECCCCC
GNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDASIMNDE
CCEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC
EASADNETVMSVIDGDKPDHDDETHPDDEPPQPPRGGRPALRVVK
CCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]