Click here to switch to the map view.

The map label for this gene is yhaJ [H]

Identifier: 218691406

GI number: 218691406

Start: 3701129

End: 3702025

Strand: Reverse

Name: yhaJ [H]

Synonym: ECED1_3772

Alternate gene names: 218691406

Gene position: 3702025-3701129 (Counterclockwise)

Preceding gene: 218691409

Following gene: 218691395

Centisome position: 71.06

GC content: 55.96

Gene sequence:

>897_bases
ATGGCCAAAGAAAGGGCATTAACGCTGGAAGCACTACGGGTTATGGATGCGATCGATCGCCGGGGCAGTTTTGCGGCGGC
GGCGGATGAACTGGGACGCGTGCCTTCCGCACTTAGCTACACCATGCAAAAACTGGAAGAAGAGCTGGATGTGGTGCTGT
TTGACCGCTCGGGCCATCGCACCAAATTCACCAATGTCGGGAGGATGTTGCTGGAACGAGGGCGCGTTTTGCTGGAAGCC
GCAGATAAACTGACTACCGATGCGGAAGCCCTCGCGCGTGGTTGGGAAACGCATCTCACCATTGTGACCGAGGCGCTGGT
ACCGACACCTGCCTTTTTCCCGTTAATCGACAAACTGGCGGCAAAAGCCAATACCCAACTGGCAATCATCACCGAAGTGC
TGGCGGGGGCGTGGGAACGGCTGGAGCAGGGGCGGGCGGATATCGTTATCGCGCCGGATATGCATTTTCGTTCCTCGTCG
GAGATCAACTCGCGCAAACTCTATACCTTAATGAACGTCTATGTTGCCGCGCCGGATCACCCGATTCATCAGGAGCCGGA
ACCGTTATCTGAAGTGACGCGCGTGAAATATCGTGGAATTGCGGTGGCGGATACCGCTCGTGAGCGCCCGGTGTTGACCG
TACAGTTGCTGGACAAACAGCCGCGCTTAACGGTGAGCACGATTGAAGATAAACGTCAGGCATTACTGGCGGGGCTTGGC
GTGGCGACGATGCCGTATCCGATGGTCGAAAAAGATATTGCGGAAGGGCGGTTGCGTGTCGTCAGCCCGGAATCGACCAG
CGAGATCGATATTATTATGGCCTGGCGTCGTGACAGTATGGGGGAGGCGAAATCCAGGTGTCTGCGGGAAATTCCCAAAC
TTTTTAGCGGAAAATAA

Upstream 100 bases:

>100_bases
CTTGACCTCTCTTTACTTCCTTTTATGGTAAGGGGCTGGACGCTACATTGTTAGCCAGATATTCTGCCCGGTATGTTCAA
ATTTCCTGAATGAGAACGAA

Downstream 100 bases:

>100_bases
TCGATTAAGCACCTTTTACAAGGTGCTTAATTATTATTCTTGTTCCAGTTTCGGATCTGGTCCAAAGCGGTTTTCGCCTG
GCGTACCCGCCTGGCAGTTA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSRCLREIPKLFSGK

Sequences:

>Translated_298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSRCLREIPKLFSGK
>Mature_297_residues
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAA
DKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSE
INSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGV
ATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSRCLREIPKLFSGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=298, Percent_Identity=99.3288590604027, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI87082024, Length=286, Percent_Identity=38.1118881118881, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1787949, Length=275, Percent_Identity=29.4545454545455, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786508, Length=255, Percent_Identity=30.5882352941176, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786713, Length=281, Percent_Identity=26.6903914590747, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33200; Mature: 33069

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
AKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHEEECCCC
PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSRCLREIPKLFSGK
HHHCCCHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
AKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHEEECCCC
PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSRCLREIPKLFSGK
HHHCCCHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]