Click here to switch to the map view.

The map label for this gene is ytfJ [H]

Identifier: 218691272

GI number: 218691272

Start: 3560982

End: 3561542

Strand: Reverse

Name: ytfJ [H]

Synonym: ECED1_3631

Alternate gene names: 218691272

Gene position: 3561542-3560982 (Counterclockwise)

Preceding gene: 218691273

Following gene: 218691271

Centisome position: 68.37

GC content: 48.84

Gene sequence:

>561_bases
ATGCCATCTCGTTGGATTGTCGCTCTGATCATCGCACTCTTAGCGCCAGGCGCGGCGGCACACAATTTCGTCACTGGCAA
AACGGTTACTCCTGTTTATATCCAGGAAGGCGGCGAGCTGCTTCTGAATAGCGACGACGAAATTCACTACCAAAAGTGGA
ACAGCACACAATTGACGGGAAAAGTCCGCATTATTCAGTATATCGCCGGACGTAAGTCTGCGAAGAAAAAGAACTCACTG
TTAATTAAAGCGGTTGAAGCGGCAAACTTTTCGCAGGATCGTTTTCAGCCCACCACTATTGTGAACACCGATGATGCCAT
CTTTGGTACTGGCTATTTTGTCGTTGGCAAAATCGAAAAAAATAAACGCCGCTATCCGTGGGCGCAATTCGTTATTGACG
GCAATGGTCTGGGACGCGTTGCCTGGCAATTGCCGGAGCAGAGTTCAACCATTCTGGTATTGAATAAAGCCGGGCGAATT
CAGTGGGCAAAGGACGGCAGCCTGACACCGGAAGAGGTAGATCATGTCATTGCGCTGGCGCAGAAACTGATCAATGAATA
A

Upstream 100 bases:

>100_bases
ATAACCGTCGGTCATATGATGCACCGGTGGCGCTGGATAGCGATATTCGCCAGCGTTTAAAACTGCTTATTTCGCGTTTC
CCACTATATCCGGAGCAATA

Downstream 100 bases:

>100_bases
AAAATTCAAAGGATTGAGGGCGTTAGCGAGATGAAGCTGGTTGAACACTACATCATGCGTGGTACGCGCCGTCTGGTGCT
GATTATCGTCGGTTTTCTGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MPSRWIVALIIALLAPGAAAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLTGKVRIIQYIAGRKSAKKKNSL
LIKAVEAANFSQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFVIDGNGLGRVAWQLPEQSSTILVLNKAGRI
QWAKDGSLTPEEVDHVIALAQKLINE

Sequences:

>Translated_186_residues
MPSRWIVALIIALLAPGAAAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLTGKVRIIQYIAGRKSAKKKNSL
LIKAVEAANFSQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFVIDGNGLGRVAWQLPEQSSTILVLNKAGRI
QWAKDGSLTPEEVDHVIALAQKLINE
>Mature_185_residues
PSRWIVALIIALLAPGAAAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLTGKVRIIQYIAGRKSAKKKNSLL
IKAVEAANFSQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFVIDGNGLGRVAWQLPEQSSTILVLNKAGRIQ
WAKDGSLTPEEVDHVIALAQKLINE

Specific function: Unknown

COG id: COG3054

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0045 [H]

Homologues:

Organism=Escherichia coli, GI1790662, Length=184, Percent_Identity=55.4347826086957, Blast_Score=213, Evalue=7e-57,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006513 [H]

Pfam domain/function: PF09695 YtfJ_HI0045 [H]

EC number: NA

Molecular weight: Translated: 20644; Mature: 20513

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSRWIVALIIALLAPGAAAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLTG
CCCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCEEEECCCCCEEEEECCCEEEEH
KVRIIQYIAGRKSAKKKNSLLIKAVEAANFSQDRFQPTTIVNTDDAIFGTGYFVVGKIEK
HHEEEEEHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEECCEEEEEEEEC
NKRRYPWAQFVIDGNGLGRVAWQLPEQSSTILVLNKAGRIQWAKDGSLTPEEVDHVIALA
CCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHH
QKLINE
HHHHCC
>Mature Secondary Structure 
PSRWIVALIIALLAPGAAAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLTG
CCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCEEEECCCCCEEEEECCCEEEEH
KVRIIQYIAGRKSAKKKNSLLIKAVEAANFSQDRFQPTTIVNTDDAIFGTGYFVVGKIEK
HHEEEEEHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEECCEEEEEEEEC
NKRRYPWAQFVIDGNGLGRVAWQLPEQSSTILVLNKAGRIQWAKDGSLTPEEVDHVIALA
CCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHH
QKLINE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7764507; 9298646; 10493123 [H]