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The map label for this gene is kpsC [H]

Identifier: 218691240

GI number: 218691240

Start: 3516286

End: 3518313

Strand: Direct

Name: kpsC [H]

Synonym: ECED1_3597

Alternate gene names: 218691240

Gene position: 3516286-3518313 (Clockwise)

Preceding gene: 218691239

Following gene: 218691241

Centisome position: 67.5

GC content: 51.58

Gene sequence:

>2028_bases
ATGATTGGCATTTACTCGCCTGGCATCTGGCGTATTCCGCATCTGGAGAAATTTCTGGCGCAACCGTGCCAGAAACTTTC
TCTGCTGCGCCCTGTTCCGCAAGAAGTTGATGCTATCGCCGTGTGGGGACATCGTCCCAGCGCGGCGAAACCAGTCGCCA
TCGCCAAAGCAGCGGGAAAACCCGTCATTCGTCTGGAAGATGGATTTGTGCGTTCGCTGGATCTTGGCGTCAATGGCGAG
CCGCCGCTTTCTCTGGTGGTGGATGATTGTGGCATTTACTACGATGCCAGCAAGCCTTCAGCACTGGAGAAACTGGTACA
GGATAAAGCCGGAAATACAGCTCTGATAAGCCAGGCCAGAGAAGCGATGCACACCATCGTGACCGGGGATTTGTCGAAAT
ATAACCTGGCACCTGCGTTTGTGGCTGATGAGTCAGAACGTGCAGACATCGTTCTGGTTGTCGATCAGACATTTAATGAT
ATGTCAGTGACGTATGGCAATGCTGGCCCGCATGAGTTTGCTGCCATGCTGGAAGCCGCGATGGCGGAAAATCCTCAAGC
CGAAATTTGGGTGAAGGTGCACCCAGATGTACTGGAAGGAAAGAAAACAGGTTATTTCGCTGATCTGCGTGCCACGCAAC
GAGTACGTTTGATTGCCGAGAATGTCAGCCCGCAGTCGCTATTGCGACACATTTCCCGGGTTTACGTCGTGACCTCCCAA
TACGGCTTTGAAGCCTTGCTGGCAGGAAAACCAGTAACATGTTTCGGCCAGCCCTGGTATGCAGGCTGGGGCTTAACCGA
CGATCGCCATCCGCAGTCTGCTTTGTTATCTGCCCGACGCGGTTCTGCCACGCTGGAAGAACTTTTTGCCGCAGCATACC
TGCGTTACTGTCGCTATATCGATCCGCAAACGGGAGAAGTAAGCGATCTATTTACCGTGCTGCAATGGCTGCAATTACAA
CGTCGACATCTGCAACAGCGTGATGGTTATTTATGGGCGCCAGGCTTAACGCTGTGGAAGTCAGCGATCCTGAAACCTTT
CTTGCAAACGGCAACAAACCGGCTGAGTTTTTCACGTCGCTGTACTGCGGCGAGCGCCTGCGTGGTATGGGGTGTAAAGG
GAGAACAGCAATGGCGAGCCGAAGCGCAGCGAAAATCACTGCCGTTATGGCGAATGGAAGATGGTTTTCTGCGTTCATCC
GGACTTGGCTCTGACCTTTTGCCGCCGCTATCGTTGGTCCTGGATAAACGCGGGATCTACTATGACGCCACGCGCCCCTG
CGACCTGGAAGTGCTGCTTAATCACAGCCAGTTAACGCTGGCGCAGCAGATGCGAGCTGAAAAATTACGCCAGCGACTGG
TTGAAAGCAAACTGAGCAAATACAACCTGGGGGCTGATTTCTCTCTGCCAGCCGAAGCCAAAGGTAAAAAAGTTATCCTG
GTGCCGGGTCAGGTAGAAGACGATGCCTCAATTAAAACAGGCACTGTCTCGATTAAGAGCAACCTTGAGTTATTACGCAC
AGTACGCGAGCGCAATCCGCACGCTTACATTATTTATAAACCGCACCCGGATGTACTGGTGGGGAATCGCAAGGGCAATA
TTCCGGCAGAACTAATTGCTGAACTCGCTGATTATCAGGCACTGGACGCAGATATTATTCAATGCATCCAGCGCGCAGAT
GAAGTGCACACCATGACATCATTGTCCGGGTTTGAAGCGTTATTACATGGCAAGCAAGTTCATTGTTACGGCCTGCCCTT
CTATGCCGGTTGGGGTTTAACCGTTGATGAACATCATTGCCCGCGCCGCGAGCGCAGATTAACGATAGCAGACTTGATCT
ATCAGGCGTTGATTGTTTACCCAACATATATTCACCCAACACGGCTACAGCCTATTACGGTTGAGGAAGCTGCGGAATAT
TTAATCCAGACGCCGCGTAAGCCGATGTTTATTACCCGAAAAAAAGCGGGGCGGGTAATACGCTATTGCCGCAAATTAAT
TATGTTCTGCAAGGTCAGATTTGGCTAA

Upstream 100 bases:

>100_bases
TCCGCACATTTGAGGTTGCCGCAACCGGTCCGGGCGTCGACACCCCGGCATGCCTGGAAAAAGTGCGCGCCCTGATGGCA
CAGGAACTGGCTGAAAACGC

Downstream 100 bases:

>100_bases
ACAATTTCATAGTTGACTATTACACAGATTATTTATGCAAGGCAACGCACTAACTATTTTATTATCGGGTAAAAAATATC
TGCTATTGCAGGGACCGATG

Product: Capsule polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFND
MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVTSQ
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQ
RRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSS
GLGSDLLPPLSLVLDKRGIYYDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKGKKVIL
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAELIAELADYQALDADIIQCIQRAD
EVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEY
LIQTPRKPMFITRKKAGRVIRYCRKLIMFCKVRFG

Sequences:

>Translated_675_residues
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFND
MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVTSQ
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQ
RRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSS
GLGSDLLPPLSLVLDKRGIYYDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKGKKVIL
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAELIAELADYQALDADIIQCIQRAD
EVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEY
LIQTPRKPMFITRKKAGRVIRYCRKLIMFCKVRFG
>Mature_675_residues
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFND
MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVTSQ
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQ
RRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSS
GLGSDLLPPLSLVLDKRGIYYDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKGKKVIL
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAELIAELADYQALDADIIQCIQRAD
EVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEY
LIQTPRKPMFITRKKAGRVIRYCRKLIMFCKVRFG

Specific function: Unknown

COG id: COG3563

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti lipopolysaccharide processing protein lpsZ [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007833 [H]

Pfam domain/function: PF05159 Capsule_synth [H]

EC number: NA

Molecular weight: Translated: 75647; Mature: 75647

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCC
PVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAR
CEEEECCCCEEEEECCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
EAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAA
HHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHH
MAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVTSQ
HHCCCCCEEEEEECCHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECC
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYI
CCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
DPQTGEVSDLFTVLQWLQLQRRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
CTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIY
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCE
YDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKGKKVIL
ECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAELIA
ECCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHH
ELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHC
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCEECCCCC
PRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQTPRKPMFITRKKAGRVI
CHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEHHHHHHHH
RYCRKLIMFCKVRFG
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCC
PVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAR
CEEEECCCCEEEEECCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
EAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAA
HHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHH
MAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVTSQ
HHCCCCCEEEEEECCHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECC
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYI
CCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
DPQTGEVSDLFTVLQWLQLQRRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
CTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIY
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCE
YDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKGKKVIL
ECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAELIA
ECCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHH
ELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHC
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCEECCCCC
PRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQTPRKPMFITRKKAGRVI
CHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEHHHHHHHH
RYCRKLIMFCKVRFG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397187; 7875563 [H]