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The map label for this gene is rci [H]

Identifier: 218691167

GI number: 218691167

Start: 3443889

End: 3445013

Strand: Direct

Name: rci [H]

Synonym: ECED1_3517

Alternate gene names: 218691167

Gene position: 3443889-3445013 (Clockwise)

Preceding gene: 218691165

Following gene: 218691169

Centisome position: 66.11

GC content: 49.78

Gene sequence:

>1125_bases
ATGTTTCGAAAAATAAAAATTCGCAAAATGACTCTCAACCGGGCGCTGGACAAATACCTGAAGACAGTATCCATCCACAA
AAAAGGTCATCTGCAGGAGTTTTATCGCGTCAATGTGATTAAACGTCACCCTATGGCCGAGCGCTATATGGATGAAATCA
CCACCGTTGATATCGCCACTTACCGGGATCAGCGTTTGGCTCAAATTAACCCACGAACAGGGCGTCAAATCACCGGAAAC
ACCGTCCGTCTTGAACTTGCTCTTTTATCATCATTATTCAATATCGCCAGTGTGGAATGGGGGACATGCCGTATGAATCC
TGTTGAACTGGTCCGAAAACCCAAAATCAGTAGTGGACGCGATCGTCGCCTGACTTCTGGCGAAGAACGCCGACTCTCCC
GCTATTTCAGAGATAAAAATCAGCAGCTCTACGTTATCTTCCATCTGGCCCTAGAAACAGCAATGCGACAGGGGGAAATC
CTCACATTACGCTGGGAACACCTCGATTTGCAGCACGGAGTGGCGCATCTTCCTGAAACGAAAAATGGTTTACCACGCGA
TGTCCCACTCTCCCGGAAAGCTCGCAACTACCTGCAAATTCTGCCACAACAGATAAACGGCAATGTGTTCAGTTACACCT
CATCCGGTTTCAAAAGCGCCTGGCGTACCGCACTTCTGGACCTGAAAATAGAAAATCTGCATTTTCACGACCTTCGCCAT
GAAGCCATCAGCCGTTTTTTTGAACTCGGCACACTCAACGTCATGGAGGTTGCGGCCATTTCCGGCCATCGCTCTCTCAA
CATGCTGAAGCGATATACTCATCTGCGGGCGTATCAGCTGGTCAGCAAGCTCGATACAAAGCGTAAACAGACCTGCAAAA
TCGCCCCCTATTTTGTTCCCTATCCCGCAACAGTCGGGAACAGAAACGGACTGTTCATTGTGACACTGCACGATTTCGAC
CTTGAAACCCGTGCTGAAACCCGGGAACTGGCAATATCTCATGCCAGCGTATTGTTGCTGCGCACACTGGCACAGGCGGC
TCAGCGGGGTGAACGCGTTCCAACGCCAGGCGAGCTACCCGCAAACATTGATGCACGGGTCATGATTTGTCCGTTAACAA
GCTGA

Upstream 100 bases:

>100_bases
TCACTTTATTGCCTCCAAGCCACAAACCGGATTGGCACAGAGACATTGCATTTCTGATTCAGTATTCCTACCTTCCTGGG
ATTTATCGTGGAAGGCAGAT

Downstream 100 bases:

>100_bases
AGGCATATCAGAATGAAAATAAACTATAAATTCCGGATTAACTTAATCACAGTCCTTCTGTCTCAGCTCCTGATACAGAT
ATATTTGTGGCATAATATTC

Product: Shufflon-specific DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQRLAQINPRTGRQITGN
TVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEI
LTLRWEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVPYPATVGNRNGLFIVTLHDFD
LETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELPANIDARVMICPLTS

Sequences:

>Translated_374_residues
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQRLAQINPRTGRQITGN
TVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEI
LTLRWEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVPYPATVGNRNGLFIVTLHDFD
LETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELPANIDARVMICPLTS
>Mature_374_residues
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQRLAQINPRTGRQITGN
TVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEI
LTLRWEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVPYPATVGNRNGLFIVTLHDFD
LETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELPANIDARVMICPLTS

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43233; Mature: 43233

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIAT
CCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEEEEH
YRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGR
HCCCHHEECCCCCCCEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC
DRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPET
CCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCC
KNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHEEEECCCCHHHHHH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVP
HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEC
YPATVGNRNGLFIVTLHDFDLETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELP
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ANIDARVMICPLTS
CCCCCEEEEEECCC
>Mature Secondary Structure
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIAT
CCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEEEEH
YRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGR
HCCCHHEECCCCCCCEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC
DRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPET
CCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCC
KNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHEEEECCCCHHHHHH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVP
HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEC
YPATVGNRNGLFIVTLHDFDLETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELP
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ANIDARVMICPLTS
CCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]