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The map label for this gene is sss [H]

Identifier: 218691149

GI number: 218691149

Start: 3427130

End: 3427705

Strand: Reverse

Name: sss [H]

Synonym: ECED1_3497

Alternate gene names: 218691149

Gene position: 3427705-3427130 (Counterclockwise)

Preceding gene: 218691150

Following gene: 218691136

Centisome position: 65.8

GC content: 48.09

Gene sequence:

>576_bases
GTGCACTGGCGTAGTTGTGCGATTCGTCCGGCATGGTACTGGATGATTGTGGTAAATACGCTGCGTTTTACCGGGATGAG
GCTAAATCAGTTACTTCACCTGCGTCTGCGGGATGTTAATCCGGATGAAAGATGGATTGATCTGTGTTCGGAGGGAAGTA
AGACACACCATGAGTGGCGTATCCCTATGGTCAGTCATCTTGTCCCGGGAATGAGGCACTTGATTGATGAAGCGATGAAA
CGGGGGGCAAGACCTGAGGATTATCTTTTCCATTATCATCGTTATGTGTCATTGATGTCAGAAGCACCGTTCGTTACCGG
ACTTCCGGAACTGCAACCGGTAAAAGGATTTTTCAGACGTCTGACGAAAGAGTGCGGTTTCCCTGTATCACCTCATCGCT
TTCGGCATACGCTGGCCAGTACGCTGATGAGTGCACCGGAACGTAATCTTTATATGGTGAAAACCATGCTCGGGCACAGG
AATGTTTCCACCACTCTGGAGTATGTGGAAATCGATTTGAAGGGGACGGCAAGAGTGCTTGAAAAAGAACTGGCAGAACT
TACTGATGTATTTTAG

Upstream 100 bases:

>100_bases
ACAGGAAAAGAAACGTAAGAAAACACTGACGAAGAAATAGGTAAAACGAATTCTGCTGATTCTTGAACAGTTTCATGAAG
AGGAGAAGCGTTCTGGTGGT

Downstream 100 bases:

>100_bases
ATCATGACTTTGTTTTGCCGTTGTTGACAACCTGAAAAAGCTTTGCAAGCATAATAAATGCTCGAGAAAAGGAGCATGCG
ACCAACATGCTCCTTAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MHWRSCAIRPAWYWMIVVNTLRFTGMRLNQLLHLRLRDVNPDERWIDLCSEGSKTHHEWRIPMVSHLVPGMRHLIDEAMK
RGARPEDYLFHYHRYVSLMSEAPFVTGLPELQPVKGFFRRLTKECGFPVSPHRFRHTLASTLMSAPERNLYMVKTMLGHR
NVSTTLEYVEIDLKGTARVLEKELAELTDVF

Sequences:

>Translated_191_residues
MHWRSCAIRPAWYWMIVVNTLRFTGMRLNQLLHLRLRDVNPDERWIDLCSEGSKTHHEWRIPMVSHLVPGMRHLIDEAMK
RGARPEDYLFHYHRYVSLMSEAPFVTGLPELQPVKGFFRRLTKECGFPVSPHRFRHTLASTLMSAPERNLYMVKTMLGHR
NVSTTLEYVEIDLKGTARVLEKELAELTDVF
>Mature_191_residues
MHWRSCAIRPAWYWMIVVNTLRFTGMRLNQLLHLRLRDVNPDERWIDLCSEGSKTHHEWRIPMVSHLVPGMRHLIDEAMK
RGARPEDYLFHYHRYVSLMSEAPFVTGLPELQPVKGFFRRLTKECGFPVSPHRFRHTLASTLMSAPERNLYMVKTMLGHR
NVSTTLEYVEIDLKGTARVLEKELAELTDVF

Specific function: Potential site-specific recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22516; Mature: 22516

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWRSCAIRPAWYWMIVVNTLRFTGMRLNQLLHLRLRDVNPDERWIDLCSEGSKTHHEWR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHCC
IPMVSHLVPGMRHLIDEAMKRGARPEDYLFHYHRYVSLMSEAPFVTGLPELQPVKGFFRR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LTKECGFPVSPHRFRHTLASTLMSAPERNLYMVKTMLGHRNVSTTLEYVEIDLKGTARVL
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHEEHEEEECCHHHHHH
EKELAELTDVF
HHHHHHHHCCC
>Mature Secondary Structure
MHWRSCAIRPAWYWMIVVNTLRFTGMRLNQLLHLRLRDVNPDERWIDLCSEGSKTHHEWR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHCC
IPMVSHLVPGMRHLIDEAMKRGARPEDYLFHYHRYVSLMSEAPFVTGLPELQPVKGFFRR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LTKECGFPVSPHRFRHTLASTLMSAPERNLYMVKTMLGHRNVSTTLEYVEIDLKGTARVL
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHEEHEEEECCHHHHHH
EKELAELTDVF
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11021913 [H]